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March 2, 2018 19:26
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example for strawman model for variant to genotype data
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| { | |
| "entities": [ | |
| { | |
| "id": "MGI:4362924", | |
| "label": "Mysm1<tm1a(KOMP)Wtsi", | |
| "taxon": "NCBITaxon:10090", | |
| "type": { | |
| "label": "variant allele", | |
| "id": "GENO:0000002" | |
| } | |
| }, | |
| { | |
| "id": "IMPC:1234", | |
| "biological_sex": "male", | |
| "label": "Mysm1<tm1a(KOMP)Wtsi>/Mysm1<tm1a(KOMP)Wtsi>[C57BL/6Dnk-HMGU-EPD0019_1_A05] (male)", | |
| "taxon": "NCBITaxon:10090", | |
| "type": { | |
| "label": "male intrinsic genotype", | |
| "id": "GENO:0000646" | |
| } | |
| }, | |
| { | |
| "id": "IMPC:3456", | |
| "biological_sex": "female", | |
| "label": "Mysm1<tm1a(KOMP)Wtsi>/Mysm1<tm1a(KOMP)Wtsi> [C57BL/6-WTSI-EPD0019_1_A05_73] (female)", | |
| "taxon": "NCBITaxon:10090", | |
| "type": { | |
| "label": "female intrinsic genotype", | |
| "id": "GENO:0000647" | |
| } | |
| }, | |
| { | |
| "id": "MGI:2444584", | |
| "label": "Mysm1", | |
| "taxon": "NCBITaxon:10090", | |
| "type": { | |
| "label": "gene", | |
| "id": "SO:0000704" | |
| } | |
| }, | |
| { | |
| "id": "MGI:2159769", | |
| "label": "C57BL/6", | |
| "taxon": "NCBITaxon:10090", | |
| "type": { | |
| "label": "background genotype", | |
| "id": "GENO:0000611" | |
| } | |
| }, | |
| { | |
| "id": "MGI:1234", | |
| "label": "tm1a(KOMP)Wtsi'", | |
| "taxon": "NCBITaxon:10090", | |
| "type": { | |
| "label": "insertion", | |
| "id": "SO:0000667" | |
| }, | |
| "consequence": [ | |
| "Null/knockout", | |
| "Reporter" | |
| ], | |
| "comment": "Vector: L1L2_st0" | |
| } | |
| ], | |
| "relations": [ | |
| { | |
| "MGI:4362924": { | |
| "has_part": [ | |
| { | |
| "entity": "MGI:1234", | |
| "predicate": "GENO:0000382" | |
| } | |
| ], | |
| "part_of": [ | |
| { | |
| "entity": "IMPC:1234", | |
| "predicate": "GENO:0000383" | |
| }, | |
| { | |
| "entity": "IMPC:3456", | |
| "predicate": "GENO:0000383" | |
| }, | |
| { | |
| "entity": "MGI:2159769", | |
| "predicate": "GENO:0000387" | |
| }, | |
| { | |
| "entity": "MGI:2444584", | |
| "predicate": "GENO:0000445" | |
| } | |
| ] | |
| } | |
| } | |
| ] | |
| } |
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