Kent Shefchek kshefchek

A word cloud of my gitter messages for Monarch Init from 2016-2019

# Clone gitter-log (credit https://github.com/DoctorBud/gitter-log)
git clone https://github.com/kshefchek/gitter-log
npm install
npm run log

# Pull out my messages
cat mylog.json | jq '.[] | select(.fromUser.username == "kshefchek")' | jq -r .text >> gitter.txt

	#!/usr/bin/env python3
	import timeit
	from random import randrange
	from rdflib import URIRef, ConjunctiveGraph


	base_iri = 'http://example.org/foo_'
	subject_id = randrange(100000)
	predicate_id = randrange(100000)
	object_id = randrange(100000)

	#!/usr/bin/env python3
	""" solr-pmids.py

	Set up:
	pythom3 -m venv venv
	source venv/bin/activate
	pip install requests
	"""
	import logging
	import requests

	#!/usr/bin/env python3
	"""
	virtualenv venv -p /usr/bin/python3
	source venv/bin/activate
	pip install rdflib prefixcommons
	"""
	import gzip
	from copy import deepcopy
	from typing import Set, Optional
	from rdflib import URIRef, BNode, Literal, Graph, RDFS

	def random_weighted_walk(
	start: str,
	graph: Graph,
	end_distance: int,
	travelled_cache: Optional[Dict]=None,
	direction: str='outgoing',
	dist_walked=0) -> str:
	"""
	Traverse an ontology, ending up {distance} edges away from the
	starting node

	from typing import Set, Union, List, Optional, Sequence, Num
	from functools import reduce, partial
	from collections import Hashable
	#from decorators import memoized
	import copy
	from itertools import chain
	from rdflib import URIRef, BNode, Literal, Graph, RDFS

	# Union types
	Num = Union[int, float]

	CALL apoc.periodic.iterate(
	"MATCH (a)-[r]->(b)
	WITH FILTER(lab in labels(a)
	WHERE (
	lab <> 'Class' AND
	lab <> 'NamedIndividual' AND
	lab <> 'Node' AND
	lab <> 'cliqueLeader'
	)) AS a_labels,
	type(r) AS rel_type,

	{
	"entities": [
	{
	"id": "MGI:4362924",
	"label": "Mysm1<tm1a(KOMP)Wtsi",
	"taxon": "NCBITaxon:10090",
	"type": {
	"label": "variant allele",
	"id": "GENO:0000002"
	}