Skip to content

Instantly share code, notes, and snippets.

@indexofire

indexofire/assembly pipeline

Created October 27, 2014 11:23
Show Gist options

  • Select an option

    Learn more about clone URLs
  • Save indexofire/1a9fe975b3bea0f5aadc to your computer and use it in GitHub Desktop.

Select an option

Learn more about clone URLs
Save indexofire/1a9fe975b3bea0f5aadc to your computer and use it in GitHub Desktop.
Download ZIP
Raw
assembly pipeline
import subprocess
subprocess.call("abyss-pe k=51 n=10 in='reads1.fa reads2.fa' name=abyss_assembly", shell=True)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment