Jeff Zheng zzygyx9119
zzygyx9119
/ _Nvim-R-Tmux.md
Created
August 19, 2019 02:34
— forked from tgirke/_Nvim-R-Tmux.md
Nvim-R-Tmux: An Integrated Working Environment for R
zzygyx9119
/ gist:0d63fe969b4919bd22a1e9bc95004654
Created
July 21, 2017 17:59
— forked from phillipsm/gist:404780e419c49a5b62a8
Inmate scraping script
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| import requests | |
| from bs4 import BeautifulSoup | |
| import time | |
| # We've now imported the two packages that will do the heavy lifting | |
| # for us, reqeusts and BeautifulSoup | |
| # This is the URL that lists the current inmates | |
| # Should this URL go away, and archive is available at | |
| # http://perma.cc/2HZR-N38X |
zzygyx9119
/ run_luigi.py
Created
September 29, 2016 23:56
— forked from bonzanini/run_luigi.py
Example of Luigi task pipeline
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| # run with a custom --n | |
| # python run_luigi.py SquaredNumbers --local-scheduler --n 20 | |
| import luigi | |
| class PrintNumbers(luigi.Task): | |
| n = luigi.IntParameter(default=10) | |
| def requires(self): | |
| return [] |
zzygyx9119
/ reseqtut_lmw.py
Created
September 19, 2016 03:44
— forked from samuell/reseqtut_lmw.py
Some steps from the the Re-sequencing NGS intro tutorial [1], using Luigi workflow system [2] with the Luigi's Monkey Wrench [3] wrapper. (Refs: [1]: http://uppnex.se/twiki/do/view/Courses/NgsIntro1502/ResequencingAnalysis.html [2]: https://github.com/spotify/luigi [3]: https://github.com/samuell/luigis_monkey_wrench )
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| import luigi | |
| from luigis_monkey_wrench import * | |
| REF='human_17_v37.fasta' | |
| INDIVIDUALS=['NA06984','NA07000'] | |
| SAMPLES=['1','2'] | |
| BASENAME='.ILLUMINA.low_coverage.17q_' | |
| PICARDDIR='/sw/apps/bioinfo/picard/1.69/kalkyl/' | |
| KNOWNSITES='/proj/g2014207/labs/gatk/ALL.chr17.phase1_integrated_calls.20101123.snps_indels_svs.genotypes.vcf' |
zzygyx9119
/ .tmux.conf
Created
August 26, 2016 04:53
— forked from v-yarotsky/.tmux.conf
Mac OS X tmux config
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| ### INSTALLATION NOTES ### | |
| # 1. Install Homebrew (https://github.com/mxcl/homebrew) | |
| # 2. brew install zsh | |
| # 3. Install OhMyZsh (https://github.com/robbyrussell/oh-my-zsh) | |
| # 4. brew install reattach-to-user-namespace --wrap-pbcopy-pbpaste && brew link reattach-to-user-namespace | |
| # 5. Install iTerm2 | |
| # 6. In iTerm2 preferences for your profile set: | |
| # Character Encoding: Unicode (UTF-8) | |
| # Report Terminal Type: xterm-256color | |
| # 7. Put itunesartist and itunestrack into PATH |
zzygyx9119
/ tmux-cheatsheet.markdown
Created
February 11, 2016 04:48
— forked from MohamedAlaa/tmux-cheatsheet.markdown
tmux shortcuts & cheatsheet