Created
July 16, 2024 15:47
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(partial) EasyBuild log for failed build of /eb/develop/easybuild-easyconfigs/easybuild/easyconfigs/p/PETSc/PETSc-3.19.2-foss-2022b.eb (easyblock PR(s) #3391)
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| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.") | |
| whatis("Homepage: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain") | |
| whatis("URL: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain") | |
| conflict("foss") | |
| setenv("EBROOTFOSS","/eb/software/foss/2022b") | |
| setenv("EBVERSIONFOSS","2022b") | |
| setenv("EBDEVELFOSS","/eb/software/foss/2022b/easybuild/Core-foss-2022b-easybuild-devel") | |
| == 2024-07-16 17:47:57,143 modules.py:723 DEBUG Cached result for 'module show foss/2022b' with key '('MODULEPATH=/eb/modules/all/MPI/GCC/12.2.0/OpenMPI/4.1.4:/eb/modules/all/Compiler/GCC/12.2.0:/eb/modules/all/Compiler/GCCcore/12.2.0:/eb/modules/all/Core:/eb/modules/all:/eb/develop/modules:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', 'foss/2022b')': ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |
| /eb/modules/all/Core/foss/2022b.lua: | |
| ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |
| help([[ | |
| Description | |
| =========== | |
| GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | |
| More information | |
| ================ | |
| - Homepage: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain | |
| ]]) | |
| whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.") | |
| whatis("Homepage: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain") | |
| whatis("URL: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain") | |
| conflict("foss") | |
| setenv("EBROOTFOSS","/eb/software/foss/2022b") | |
| setenv("EBVERSIONFOSS","2022b") | |
| setenv("EBDEVELFOSS","/eb/software/foss/2022b/easybuild/Core-foss-2022b-easybuild-devel") | |
| == 2024-07-16 17:47:57,143 modules.py:582 DEBUG Checking line '------------------------------------------------------------------------------------------------------------------------------------------------------------------------------' to determine whether foss/2022b exists... | |
| == 2024-07-16 17:47:57,143 modules.py:586 DEBUG Treating line '------------------------------------------------------------------------------------------------------------------------------------------------------------------------------' as whitespace, so skipping it | |
| == 2024-07-16 17:47:57,143 modules.py:582 DEBUG Checking line ' /eb/modules/all/Core/foss/2022b.lua:' to determine whether foss/2022b exists... | |
| == 2024-07-16 17:47:57,143 modules.py:609 DEBUG Result for existence check of foss/2022b based on 'module show' output line ' /eb/modules/all/Core/foss/2022b.lua:': True | |
| == 2024-07-16 17:47:57,143 modules.py:656 INFO Result for existence check of foss/2022b module: True | |
| == 2024-07-16 17:47:57,143 modules.py:719 DEBUG Found cached result for 'module show foss/2022b' with key '('MODULEPATH=/eb/modules/all/MPI/GCC/12.2.0/OpenMPI/4.1.4:/eb/modules/all/Compiler/GCC/12.2.0:/eb/modules/all/Compiler/GCCcore/12.2.0:/eb/modules/all/Core:/eb/modules/all:/eb/develop/modules:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', 'foss/2022b')': ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |
| /eb/modules/all/Core/foss/2022b.lua: | |
| ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |
| help([[ | |
| Description | |
| =========== | |
| GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | |
| More information | |
| ================ | |
| - Homepage: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain | |
| ]]) | |
| whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.") | |
| whatis("Homepage: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain") | |
| whatis("URL: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain") | |
| conflict("foss") | |
| setenv("EBROOTFOSS","/eb/software/foss/2022b") | |
| setenv("EBVERSIONFOSS","2022b") | |
| setenv("EBDEVELFOSS","/eb/software/foss/2022b/easybuild/Core-foss-2022b-easybuild-devel") | |
| == 2024-07-16 17:47:57,143 toolchain.py:750 DEBUG List of toolchain dependencies from toolchain module: ['GCC/12.2.0', 'OpenMPI/4.1.4', 'FlexiBLAS/3.2.1', 'FFTW/3.3.10', 'FFTW.MPI/3.3.10', 'ScaLAPACK/2.2.0-fb'] | |
| == 2024-07-16 17:47:57,144 toolchain.py:592 DEBUG Toolchain definition for {'name': 'foss', 'version': '2022b', 'toolchain': {'name': 'system', 'version': ''}, 'versionsuffix': '', 'parsed': True, 'hidden': False, 'full_mod_name': 'Core/foss/2022b', 'short_mod_name': 'foss/2022b', 'system': True}: {'BLACS': ['BLACS'], 'BLAS': ['FlexiBLAS'], 'COMPILER': ['GCC'], 'FFT': ['FFTW'], 'LAPACK': ['FlexiBLAS'], 'MPI': ['OpenMPI'], 'SCALAPACK': ['ScaLAPACK']} | |
| == 2024-07-16 17:47:57,144 toolchain.py:442 DEBUG get_software_version software version 2.2.0 for ScaLAPACK was found in environment | |
| == 2024-07-16 17:47:57,144 mns.py:170 DEBUG Checking whether 'GCC/12.2.0' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2024-07-16 17:47:57,144 mns.py:170 DEBUG Checking whether 'OpenMPI/4.1.4' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2024-07-16 17:47:57,144 mns.py:170 DEBUG Checking whether 'FlexiBLAS/3.2.1' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2024-07-16 17:47:57,144 mns.py:170 DEBUG Checking whether 'FFTW/3.3.10' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2024-07-16 17:47:57,144 mns.py:170 DEBUG Checking whether 'FFTW.MPI/3.3.10' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2024-07-16 17:47:57,144 mns.py:170 DEBUG Checking whether 'ScaLAPACK/2.2.0-fb' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2024-07-16 17:47:57,144 toolchain.py:760 DEBUG Removing BLACS from list of optional toolchain elements. | |
| == 2024-07-16 17:47:57,145 toolchain.py:763 DEBUG List of toolchain elements from toolchain definition: {'ScaLAPACK', 'GCC', 'FlexiBLAS', 'OpenMPI', 'FFTW'} | |
| == 2024-07-16 17:47:57,145 mns.py:170 DEBUG Checking whether 'GCC/12.2.0' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
| == 2024-07-16 17:47:57,145 mns.py:170 DEBUG Checking whether 'OpenMPI/4.1.4' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
| == 2024-07-16 17:47:57,145 mns.py:170 DEBUG Checking whether 'FlexiBLAS/3.2.1' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
| == 2024-07-16 17:47:57,145 mns.py:170 DEBUG Checking whether 'FFTW/3.3.10' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
| == 2024-07-16 17:47:57,145 mns.py:170 DEBUG Checking whether 'FFTW.MPI/3.3.10' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
| == 2024-07-16 17:47:57,145 mns.py:170 DEBUG Checking whether 'ScaLAPACK/2.2.0-fb' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: True | |
| == 2024-07-16 17:47:57,145 mns.py:170 DEBUG Checking whether 'GCC/12.2.0' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: True | |
| == 2024-07-16 17:47:57,145 mns.py:170 DEBUG Checking whether 'GCC/12.2.0' is a module name for software with name 'FlexiBLAS' via regex ^FlexiBLAS(/\S+)?$: False | |
| == 2024-07-16 17:47:57,145 mns.py:170 DEBUG Checking whether 'OpenMPI/4.1.4' is a module name for software with name 'FlexiBLAS' via regex ^FlexiBLAS(/\S+)?$: False | |
| == 2024-07-16 17:47:57,145 mns.py:170 DEBUG Checking whether 'FlexiBLAS/3.2.1' is a module name for software with name 'FlexiBLAS' via regex ^FlexiBLAS(/\S+)?$: True | |
| == 2024-07-16 17:47:57,145 mns.py:170 DEBUG Checking whether 'GCC/12.2.0' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False | |
| == 2024-07-16 17:47:57,145 mns.py:170 DEBUG Checking whether 'OpenMPI/4.1.4' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: True | |
| == 2024-07-16 17:47:57,145 mns.py:170 DEBUG Checking whether 'GCC/12.2.0' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
| == 2024-07-16 17:47:57,146 mns.py:170 DEBUG Checking whether 'OpenMPI/4.1.4' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
| == 2024-07-16 17:47:57,146 mns.py:170 DEBUG Checking whether 'FlexiBLAS/3.2.1' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
| == 2024-07-16 17:47:57,146 mns.py:170 DEBUG Checking whether 'FFTW/3.3.10' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: True | |
| == 2024-07-16 17:47:57,146 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2024-07-16 17:47:57,147 compiler.py:338 INFO _set_optimal_architecture: no optarch found for compiler GCC. Ignoring option. | |
| == 2024-07-16 17:47:57,147 compiler.py:362 INFO _set_optimal_architecture: using march=native as optarch for x86_64/AMD. | |
| == 2024-07-16 17:47:57,148 toolchain.py:442 DEBUG get_software_version software version 4.1.4 for OpenMPI was found in environment | |
| == 2024-07-16 17:47:57,148 mpi.py:222 DEBUG usempi set: defining CC_SEQ as gcc | |
| == 2024-07-16 17:47:57,148 mpi.py:224 DEBUG usempi set: switching CC value gcc for MPICC value mpicc | |
| == 2024-07-16 17:47:57,149 mpi.py:222 DEBUG usempi set: defining CXX_SEQ as g++ | |
| == 2024-07-16 17:47:57,149 mpi.py:224 DEBUG usempi set: switching CXX value g++ for MPICXX value mpicxx | |
| == 2024-07-16 17:47:57,149 mpi.py:222 DEBUG usempi set: defining F77_SEQ as gfortran | |
| == 2024-07-16 17:47:57,149 mpi.py:224 DEBUG usempi set: switching F77 value gfortran for MPIF77 value mpifort | |
| == 2024-07-16 17:47:57,149 mpi.py:222 DEBUG usempi set: defining F90_SEQ as gfortran | |
| == 2024-07-16 17:47:57,150 mpi.py:224 DEBUG usempi set: switching F90 value gfortran for MPIF90 value mpifort | |
| == 2024-07-16 17:47:57,150 mpi.py:222 DEBUG usempi set: defining FC_SEQ as gfortran | |
| == 2024-07-16 17:47:57,150 mpi.py:224 DEBUG usempi set: switching FC value gfortran for MPIFC value mpifort | |
| == 2024-07-16 17:47:57,150 toolchain.py:432 DEBUG get_software_root software root /eb/software/OpenMPI/4.1.4-GCC-12.2.0 for OpenMPI was found in environment | |
| == 2024-07-16 17:47:57,151 toolchain.py:432 DEBUG get_software_root software root /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0 for FlexiBLAS was found in environment | |
| == 2024-07-16 17:47:57,151 toolchain.py:432 DEBUG get_software_root software root /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0 for FlexiBLAS was found in environment | |
| == 2024-07-16 17:47:57,154 toolchain.py:432 DEBUG get_software_root software root /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0 for FlexiBLAS was found in environment | |
| == 2024-07-16 17:47:57,154 toolchain.py:442 DEBUG get_software_version software version 2.2.0 for ScaLAPACK was found in environment | |
| == 2024-07-16 17:47:57,156 toolchain.py:432 DEBUG get_software_root software root /eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb for ScaLAPACK was found in environment | |
| == 2024-07-16 17:47:57,156 toolchain.py:432 DEBUG get_software_root software root /eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb for ScaLAPACK was found in environment | |
| == 2024-07-16 17:47:57,156 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/include was not found | |
| == 2024-07-16 17:47:57,156 toolchain.py:442 DEBUG get_software_version software version 3.3.10 for FFTW was found in environment | |
| == 2024-07-16 17:47:57,157 toolchain.py:432 DEBUG get_software_root software root /eb/software/FFTW.MPI/3.3.10-gompi-2022b for FFTW.MPI was found in environment | |
| == 2024-07-16 17:47:57,157 toolchain.py:432 DEBUG get_software_root software root /eb/software/FFTW.MPI/3.3.10-gompi-2022b for FFTW.MPI was found in environment | |
| == 2024-07-16 17:47:57,157 toolchain.py:871 DEBUG prepare: set additional variables onlymod=False | |
| == 2024-07-16 17:47:57,157 toolchain.py:432 DEBUG get_software_root software root /eb/software/CMake/3.24.3-GCCcore-12.2.0 for CMake was found in environment | |
| == 2024-07-16 17:47:57,158 toolchain.py:432 DEBUG get_software_root software root /eb/software/Python/3.10.8-GCCcore-12.2.0 for Python was found in environment | |
| == 2024-07-16 17:47:57,158 toolchain.py:432 DEBUG get_software_root software root /eb/software/SciPy-bundle/2023.02-gfbf-2022b for SciPy-bundle was found in environment | |
| == 2024-07-16 17:47:57,158 toolchain.py:432 DEBUG get_software_root software root /eb/software/Boost/1.81.0-GCC-12.2.0 for Boost was found in environment | |
| == 2024-07-16 17:47:57,158 toolchain.py:432 DEBUG get_software_root software root /eb/software/METIS/5.1.0-GCCcore-12.2.0 for METIS was found in environment | |
| == 2024-07-16 17:47:57,158 toolchain.py:432 DEBUG get_software_root software root /eb/software/SCOTCH/7.0.3-gompi-2022b for SCOTCH was found in environment | |
| == 2024-07-16 17:47:57,158 toolchain.py:432 DEBUG get_software_root software root /eb/software/MUMPS/5.6.1-foss-2022b-metis for MUMPS was found in environment | |
| == 2024-07-16 17:47:57,158 toolchain.py:432 DEBUG get_software_root software root /eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0 for SuiteSparse was found in environment | |
| == 2024-07-16 17:47:57,158 toolchain.py:432 DEBUG get_software_root software root /eb/software/Hypre/2.27.0-foss-2022b for Hypre was found in environment | |
| == 2024-07-16 17:47:57,158 toolchain.py:432 DEBUG get_software_root software root /eb/software/ParMETIS/4.0.3-gompi-2022b for ParMETIS was found in environment | |
| == 2024-07-16 17:47:57,158 toolchain.py:432 DEBUG get_software_root software root /eb/software/SuperLU_DIST/8.1.2-foss-2022b for SuperLU_DIST was found in environment | |
| == 2024-07-16 17:47:57,158 toolchain.py:432 DEBUG get_software_root software root /eb/software/mpi4py/3.1.4-gompi-2022b for mpi4py was found in environment | |
| == 2024-07-16 17:47:57,158 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/CMake/3.24.3-GCCcore-12.2.0/include was not found | |
| == 2024-07-16 17:47:57,158 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/CMake/3.24.3-GCCcore-12.2.0/lib64 was not found | |
| == 2024-07-16 17:47:57,158 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/CMake/3.24.3-GCCcore-12.2.0/lib was not found | |
| == 2024-07-16 17:47:57,159 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/SciPy-bundle/2023.02-gfbf-2022b/include was not found | |
| == 2024-07-16 17:47:57,159 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/mpi4py/3.1.4-gompi-2022b/include was not found | |
| == 2024-07-16 17:47:57,162 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_INC_DIR to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas | |
| == 2024-07-16 17:47:57,162 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2024-07-16 17:47:57,162 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2024-07-16 17:47:57,162 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas | |
| == 2024-07-16 17:47:57,162 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2024-07-16 17:47:57,162 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2024-07-16 17:47:57,162 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib | |
| == 2024-07-16 17:47:57,162 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib (previously undefined) | |
| == 2024-07-16 17:47:57,162 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib (previously undefined) | |
| == 2024-07-16 17:47:57,162 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_SHARED_LIBS to libflexiblas.so,libgfortran.so,libpthread.so | |
| == 2024-07-16 17:47:57,162 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-07-16 17:47:57,162 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-07-16 17:47:57,163 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libflexiblas.a,libgfortran.a,libpthread.a | |
| == 2024-07-16 17:47:57,163 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-07-16 17:47:57,163 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-07-16 17:47:57,163 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_SHARED_LIBS to libflexiblas.so,libgfortran.so | |
| == 2024-07-16 17:47:57,163 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-07-16 17:47:57,163 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-07-16 17:47:57,163 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libflexiblas.a,libgfortran.a | |
| == 2024-07-16 17:47:57,163 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-07-16 17:47:57,163 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-07-16 17:47:57,163 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LIB_DIR to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib | |
| == 2024-07-16 17:47:57,163 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib (previously undefined) | |
| == 2024-07-16 17:47:57,163 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib (previously undefined) | |
| == 2024-07-16 17:47:57,163 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_MT_SHARED_LIBS to libflexiblas.so,libgfortran.so,libpthread.so | |
| == 2024-07-16 17:47:57,163 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-07-16 17:47:57,163 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-07-16 17:47:57,163 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libflexiblas.a,libgfortran.a,libpthread.a | |
| == 2024-07-16 17:47:57,163 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-07-16 17:47:57,164 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-07-16 17:47:57,164 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_SHARED_LIBS to libflexiblas.so,libgfortran.so | |
| == 2024-07-16 17:47:57,164 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-07-16 17:47:57,164 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-07-16 17:47:57,164 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_STATIC_LIBS to libflexiblas.a,libgfortran.a | |
| == 2024-07-16 17:47:57,164 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-07-16 17:47:57,164 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-07-16 17:47:57,164 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CC to mpicc | |
| == 2024-07-16 17:47:57,164 environment.py:93 INFO Environment variable CC set to mpicc (previously undefined) | |
| == 2024-07-16 17:47:57,164 environment.py:93 INFO Environment variable EBVARCC set to mpicc (previously undefined) | |
| == 2024-07-16 17:47:57,164 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CC_SEQ to gcc | |
| == 2024-07-16 17:47:57,164 environment.py:93 INFO Environment variable CC_SEQ set to gcc (previously undefined) | |
| == 2024-07-16 17:47:57,164 environment.py:93 INFO Environment variable EBVARCC_SEQ set to gcc (previously undefined) | |
| == 2024-07-16 17:47:57,164 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC | |
| == 2024-07-16 17:47:57,164 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
| == 2024-07-16 17:47:57,164 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
| == 2024-07-16 17:47:57,165 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/eb/software/SuperLU_DIST/8.1.2-foss-2022b/include -I/eb/software/ParMETIS/4.0.3-gompi-2022b/include -I/eb/software/Hypre/2.27.0-foss-2022b/include -I/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include -I/eb/software/MUMPS/5.6.1-foss-2022b-metis/include -I/eb/software/SCOTCH/7.0.3-gompi-2022b/include -I/eb/software/METIS/5.1.0-GCCcore-12.2.0/include -I/eb/software/Boost/1.81.0-GCC-12.2.0/include -I/eb/software/Python/3.10.8-GCCcore-12.2.0/include -I/eb/software/FFTW.MPI/3.3.10-gompi-2022b/include -I/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include -I/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas | |
| == 2024-07-16 17:47:57,165 environment.py:93 INFO Environment variable CPPFLAGS set to -I/eb/software/SuperLU_DIST/8.1.2-foss-2022b/include -I/eb/software/ParMETIS/4.0.3-gompi-2022b/include -I/eb/software/Hypre/2.27.0-foss-2022b/include -I/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include -I/eb/software/MUMPS/5.6.1-foss-2022b-metis/include -I/eb/software/SCOTCH/7.0.3-gompi-2022b/include -I/eb/software/METIS/5.1.0-GCCcore-12.2.0/include -I/eb/software/Boost/1.81.0-GCC-12.2.0/include -I/eb/software/Python/3.10.8-GCCcore-12.2.0/include -I/eb/software/FFTW.MPI/3.3.10-gompi-2022b/include -I/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include -I/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2024-07-16 17:47:57,165 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/eb/software/SuperLU_DIST/8.1.2-foss-2022b/include -I/eb/software/ParMETIS/4.0.3-gompi-2022b/include -I/eb/software/Hypre/2.27.0-foss-2022b/include -I/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include -I/eb/software/MUMPS/5.6.1-foss-2022b-metis/include -I/eb/software/SCOTCH/7.0.3-gompi-2022b/include -I/eb/software/METIS/5.1.0-GCCcore-12.2.0/include -I/eb/software/Boost/1.81.0-GCC-12.2.0/include -I/eb/software/Python/3.10.8-GCCcore-12.2.0/include -I/eb/software/FFTW.MPI/3.3.10-gompi-2022b/include -I/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include -I/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2024-07-16 17:47:57,165 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CXX to mpicxx | |
| == 2024-07-16 17:47:57,165 environment.py:93 INFO Environment variable CXX set to mpicxx (previously undefined) | |
| == 2024-07-16 17:47:57,165 environment.py:93 INFO Environment variable EBVARCXX set to mpicxx (previously undefined) | |
| == 2024-07-16 17:47:57,165 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC | |
| == 2024-07-16 17:47:57,165 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
| == 2024-07-16 17:47:57,165 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
| == 2024-07-16 17:47:57,165 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CXX_SEQ to g++ | |
| == 2024-07-16 17:47:57,165 environment.py:93 INFO Environment variable CXX_SEQ set to g++ (previously undefined) | |
| == 2024-07-16 17:47:57,165 environment.py:93 INFO Environment variable EBVARCXX_SEQ set to g++ (previously undefined) | |
| == 2024-07-16 17:47:57,165 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F77 to mpifort | |
| == 2024-07-16 17:47:57,165 environment.py:93 INFO Environment variable F77 set to mpifort (previously undefined) | |
| == 2024-07-16 17:47:57,165 environment.py:93 INFO Environment variable EBVARF77 set to mpifort (previously undefined) | |
| == 2024-07-16 17:47:57,166 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F77_SEQ to gfortran | |
| == 2024-07-16 17:47:57,166 environment.py:93 INFO Environment variable F77_SEQ set to gfortran (previously undefined) | |
| == 2024-07-16 17:47:57,166 environment.py:93 INFO Environment variable EBVARF77_SEQ set to gfortran (previously undefined) | |
| == 2024-07-16 17:47:57,166 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F90 to mpifort | |
| == 2024-07-16 17:47:57,166 environment.py:93 INFO Environment variable F90 set to mpifort (previously undefined) | |
| == 2024-07-16 17:47:57,166 environment.py:93 INFO Environment variable EBVARF90 set to mpifort (previously undefined) | |
| == 2024-07-16 17:47:57,166 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC | |
| == 2024-07-16 17:47:57,166 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
| == 2024-07-16 17:47:57,166 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
| == 2024-07-16 17:47:57,166 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F90_SEQ to gfortran | |
| == 2024-07-16 17:47:57,166 environment.py:93 INFO Environment variable F90_SEQ set to gfortran (previously undefined) | |
| == 2024-07-16 17:47:57,166 environment.py:93 INFO Environment variable EBVARF90_SEQ set to gfortran (previously undefined) | |
| == 2024-07-16 17:47:57,166 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FC to mpifort | |
| == 2024-07-16 17:47:57,166 environment.py:93 INFO Environment variable FC set to mpifort (previously undefined) | |
| == 2024-07-16 17:47:57,166 environment.py:93 INFO Environment variable EBVARFC set to mpifort (previously undefined) | |
| == 2024-07-16 17:47:57,166 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC | |
| == 2024-07-16 17:47:57,167 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
| == 2024-07-16 17:47:57,167 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
| == 2024-07-16 17:47:57,167 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FC_SEQ to gfortran | |
| == 2024-07-16 17:47:57,167 environment.py:93 INFO Environment variable FC_SEQ set to gfortran (previously undefined) | |
| == 2024-07-16 17:47:57,167 environment.py:93 INFO Environment variable EBVARFC_SEQ set to gfortran (previously undefined) | |
| == 2024-07-16 17:47:57,167 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC | |
| == 2024-07-16 17:47:57,167 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
| == 2024-07-16 17:47:57,167 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
| == 2024-07-16 17:47:57,167 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /eb/software/FFTW.MPI/3.3.10-gompi-2022b/include | |
| == 2024-07-16 17:47:57,167 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2022b/include (previously undefined) | |
| == 2024-07-16 17:47:57,167 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2022b/include (previously undefined) | |
| == 2024-07-16 17:47:57,167 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib | |
| == 2024-07-16 17:47:57,167 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib (previously undefined) | |
| == 2024-07-16 17:47:57,167 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib (previously undefined) | |
| == 2024-07-16 17:47:57,167 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_SHARED_LIBS to libfftw3_mpi.so,libfftw3.so | |
| == 2024-07-16 17:47:57,167 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined) | |
| == 2024-07-16 17:47:57,168 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined) | |
| == 2024-07-16 17:47:57,168 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_SHARED_LIBS_MT to libfftw3_omp.so,libfftw3.so,libpthread.so | |
| == 2024-07-16 17:47:57,168 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined) | |
| == 2024-07-16 17:47:57,168 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined) | |
| == 2024-07-16 17:47:57,168 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3_mpi.a,libfftw3.a | |
| == 2024-07-16 17:47:57,168 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
| == 2024-07-16 17:47:57,168 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
| == 2024-07-16 17:47:57,168 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to libfftw3_omp.a,libfftw3.a,libpthread.a | |
| == 2024-07-16 17:47:57,168 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined) | |
| == 2024-07-16 17:47:57,168 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined) | |
| == 2024-07-16 17:47:57,168 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /eb/software/FFTW.MPI/3.3.10-gompi-2022b/include | |
| == 2024-07-16 17:47:57,168 environment.py:93 INFO Environment variable FFT_INC_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2022b/include (previously undefined) | |
| == 2024-07-16 17:47:57,168 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2022b/include (previously undefined) | |
| == 2024-07-16 17:47:57,168 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib | |
| == 2024-07-16 17:47:57,168 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib (previously undefined) | |
| == 2024-07-16 17:47:57,168 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib (previously undefined) | |
| == 2024-07-16 17:47:57,169 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_SHARED_LIBS to libfftw3_mpi.so,libfftw3.so | |
| == 2024-07-16 17:47:57,169 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined) | |
| == 2024-07-16 17:47:57,169 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined) | |
| == 2024-07-16 17:47:57,169 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_SHARED_LIBS_MT to libfftw3_omp.so,libfftw3.so,libpthread.so | |
| == 2024-07-16 17:47:57,169 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined) | |
| == 2024-07-16 17:47:57,169 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined) | |
| == 2024-07-16 17:47:57,169 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3_mpi.a,libfftw3.a | |
| == 2024-07-16 17:47:57,169 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
| == 2024-07-16 17:47:57,169 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
| == 2024-07-16 17:47:57,169 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3_omp.a,libfftw3.a,libpthread.a | |
| == 2024-07-16 17:47:57,169 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined) | |
| == 2024-07-16 17:47:57,169 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined) | |
| == 2024-07-16 17:47:57,169 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran | |
| == 2024-07-16 17:47:57,169 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,169 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,169 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas | |
| == 2024-07-16 17:47:57,170 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2024-07-16 17:47:57,170 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2024-07-16 17:47:57,170 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib | |
| == 2024-07-16 17:47:57,170 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib (previously undefined) | |
| == 2024-07-16 17:47:57,170 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib (previously undefined) | |
| == 2024-07-16 17:47:57,170 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_MT_SHARED_LIBS to libflexiblas.so,libgfortran.so,libpthread.so | |
| == 2024-07-16 17:47:57,170 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-07-16 17:47:57,170 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-07-16 17:47:57,170 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libflexiblas.a,libgfortran.a,libpthread.a | |
| == 2024-07-16 17:47:57,170 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-07-16 17:47:57,170 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-07-16 17:47:57,170 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_SHARED_LIBS to libflexiblas.so,libgfortran.so | |
| == 2024-07-16 17:47:57,170 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-07-16 17:47:57,170 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-07-16 17:47:57,170 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libflexiblas.a,libgfortran.a | |
| == 2024-07-16 17:47:57,170 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-07-16 17:47:57,171 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-07-16 17:47:57,171 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/eb/software/mpi4py/3.1.4-gompi-2022b/lib64 -L/eb/software/mpi4py/3.1.4-gompi-2022b/lib -L/eb/software/SuperLU_DIST/8.1.2-foss-2022b/lib64 -L/eb/software/SuperLU_DIST/8.1.2-foss-2022b/lib -L/eb/software/ParMETIS/4.0.3-gompi-2022b/lib64 -L/eb/software/ParMETIS/4.0.3-gompi-2022b/lib -L/eb/software/Hypre/2.27.0-foss-2022b/lib64 -L/eb/software/Hypre/2.27.0-foss-2022b/lib -L/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib64 -L/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib -L/eb/software/MUMPS/5.6.1-foss-2022b-metis/lib64 -L/eb/software/MUMPS/5.6.1-foss-2022b-metis/lib -L/eb/software/SCOTCH/7.0.3-gompi-2022b/lib64 -L/eb/software/SCOTCH/7.0.3-gompi-2022b/lib -L/eb/software/METIS/5.1.0-GCCcore-12.2.0/lib64 -L/eb/software/METIS/5.1.0-GCCcore-12.2.0/lib -L/eb/software/Boost/1.81.0-GCC-12.2.0/lib64 -L/eb/software/Boost/1.81.0-GCC-12.2.0/lib -L/eb/software/SciPy-bundle/2023.02-gfbf-2022b/lib64 -L/eb/software/SciPy-bundle/2023.02-gfbf-2022b/lib -L/eb/software/Python/3.10.8-GCCcore-12.2.0/lib64 -L/eb/software/Python/3.10.8-GCCcore-12.2.0/lib -L/eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib64 -L/eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib -L/eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib64 -L/eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib -L/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib64 -L/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib -L/eb/software/GCCcore/12.2.0/lib64 -L/eb/software/GCCcore/12.2.0/lib | |
| == 2024-07-16 17:47:57,171 environment.py:93 INFO Environment variable LDFLAGS set to -L/eb/software/mpi4py/3.1.4-gompi-2022b/lib64 -L/eb/software/mpi4py/3.1.4-gompi-2022b/lib -L/eb/software/SuperLU_DIST/8.1.2-foss-2022b/lib64 -L/eb/software/SuperLU_DIST/8.1.2-foss-2022b/lib -L/eb/software/ParMETIS/4.0.3-gompi-2022b/lib64 -L/eb/software/ParMETIS/4.0.3-gompi-2022b/lib -L/eb/software/Hypre/2.27.0-foss-2022b/lib64 -L/eb/software/Hypre/2.27.0-foss-2022b/lib -L/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib64 -L/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib -L/eb/software/MUMPS/5.6.1-foss-2022b-metis/lib64 -L/eb/software/MUMPS/5.6.1-foss-2022b-metis/lib -L/eb/software/SCOTCH/7.0.3-gompi-2022b/lib64 -L/eb/software/SCOTCH/7.0.3-gompi-2022b/lib -L/eb/software/METIS/5.1.0-GCCcore-12.2.0/lib64 -L/eb/software/METIS/5.1.0-GCCcore-12.2.0/lib -L/eb/software/Boost/1.81.0-GCC-12.2.0/lib64 -L/eb/software/Boost/1.81.0-GCC-12.2.0/lib -L/eb/software/SciPy-bundle/2023.02-gfbf-2022b/lib64 -L/eb/software/SciPy-bundle/2023.02-gfbf-2022b/lib -L/eb/software/Python/3.10.8-GCCcore-12.2.0/lib64 -L/eb/software/Python/3.10.8-GCCcore-12.2.0/lib -L/eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib64 -L/eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib -L/eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib64 -L/eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib -L/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib64 -L/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib -L/eb/software/GCCcore/12.2.0/lib64 -L/eb/software/GCCcore/12.2.0/lib (previously undefined) | |
| == 2024-07-16 17:47:57,171 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/eb/software/mpi4py/3.1.4-gompi-2022b/lib64 -L/eb/software/mpi4py/3.1.4-gompi-2022b/lib -L/eb/software/SuperLU_DIST/8.1.2-foss-2022b/lib64 -L/eb/software/SuperLU_DIST/8.1.2-foss-2022b/lib -L/eb/software/ParMETIS/4.0.3-gompi-2022b/lib64 -L/eb/software/ParMETIS/4.0.3-gompi-2022b/lib -L/eb/software/Hypre/2.27.0-foss-2022b/lib64 -L/eb/software/Hypre/2.27.0-foss-2022b/lib -L/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib64 -L/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib -L/eb/software/MUMPS/5.6.1-foss-2022b-metis/lib64 -L/eb/software/MUMPS/5.6.1-foss-2022b-metis/lib -L/eb/software/SCOTCH/7.0.3-gompi-2022b/lib64 -L/eb/software/SCOTCH/7.0.3-gompi-2022b/lib -L/eb/software/METIS/5.1.0-GCCcore-12.2.0/lib64 -L/eb/software/METIS/5.1.0-GCCcore-12.2.0/lib -L/eb/software/Boost/1.81.0-GCC-12.2.0/lib64 -L/eb/software/Boost/1.81.0-GCC-12.2.0/lib -L/eb/software/SciPy-bundle/2023.02-gfbf-2022b/lib64 -L/eb/software/SciPy-bundle/2023.02-gfbf-2022b/lib -L/eb/software/Python/3.10.8-GCCcore-12.2.0/lib64 -L/eb/software/Python/3.10.8-GCCcore-12.2.0/lib -L/eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib64 -L/eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib -L/eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib64 -L/eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib -L/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib64 -L/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib -L/eb/software/GCCcore/12.2.0/lib64 -L/eb/software/GCCcore/12.2.0/lib (previously undefined) | |
| == 2024-07-16 17:47:57,171 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBBLAS to -lflexiblas -lgfortran | |
| == 2024-07-16 17:47:57,171 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,171 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,171 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -lflexiblas -lgfortran -lpthread | |
| == 2024-07-16 17:47:57,171 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-07-16 17:47:57,171 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-07-16 17:47:57,171 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBFFT to -lfftw3_mpi -lfftw3 | |
| == 2024-07-16 17:47:57,171 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined) | |
| == 2024-07-16 17:47:57,171 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined) | |
| == 2024-07-16 17:47:57,171 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -lfftw3_omp -lfftw3 -lpthread | |
| == 2024-07-16 17:47:57,171 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3_omp -lfftw3 -lpthread (previously undefined) | |
| == 2024-07-16 17:47:57,171 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3_omp -lfftw3 -lpthread (previously undefined) | |
| == 2024-07-16 17:47:57,172 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -lflexiblas -lgfortran | |
| == 2024-07-16 17:47:57,172 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,172 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,172 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -lflexiblas -lgfortran -lpthread | |
| == 2024-07-16 17:47:57,172 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-07-16 17:47:57,172 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-07-16 17:47:57,172 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lflexiblas -lgfortran -lpthread | |
| == 2024-07-16 17:47:57,172 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-07-16 17:47:57,172 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-07-16 17:47:57,172 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -lflexiblas -lgfortran | |
| == 2024-07-16 17:47:57,172 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,172 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,172 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread | |
| == 2024-07-16 17:47:57,172 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
| == 2024-07-16 17:47:57,172 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2024-07-16 17:47:57,172 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lflexiblas -lgfortran | |
| == 2024-07-16 17:47:57,173 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,173 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,173 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lflexiblas -lgfortran -lpthread | |
| == 2024-07-16 17:47:57,173 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-07-16 17:47:57,173 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-07-16 17:47:57,173 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran | |
| == 2024-07-16 17:47:57,173 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,173 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,173 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran | |
| == 2024-07-16 17:47:57,173 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,173 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2024-07-16 17:47:57,173 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPICC to mpicc | |
| == 2024-07-16 17:47:57,173 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) | |
| == 2024-07-16 17:47:57,173 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) | |
| == 2024-07-16 17:47:57,173 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx | |
| == 2024-07-16 17:47:57,173 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) | |
| == 2024-07-16 17:47:57,174 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) | |
| == 2024-07-16 17:47:57,174 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort | |
| == 2024-07-16 17:47:57,174 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) | |
| == 2024-07-16 17:47:57,174 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) | |
| == 2024-07-16 17:47:57,174 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort | |
| == 2024-07-16 17:47:57,174 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) | |
| == 2024-07-16 17:47:57,174 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) | |
| == 2024-07-16 17:47:57,174 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort | |
| == 2024-07-16 17:47:57,174 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) | |
| == 2024-07-16 17:47:57,174 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) | |
| == 2024-07-16 17:47:57,174 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /eb/software/OpenMPI/4.1.4-GCC-12.2.0/include | |
| == 2024-07-16 17:47:57,174 environment.py:93 INFO Environment variable MPI_INC_DIR set to /eb/software/OpenMPI/4.1.4-GCC-12.2.0/include (previously undefined) | |
| == 2024-07-16 17:47:57,174 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /eb/software/OpenMPI/4.1.4-GCC-12.2.0/include (previously undefined) | |
| == 2024-07-16 17:47:57,174 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /eb/software/OpenMPI/4.1.4-GCC-12.2.0/lib64 | |
| == 2024-07-16 17:47:57,174 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /eb/software/OpenMPI/4.1.4-GCC-12.2.0/lib64 (previously undefined) | |
| == 2024-07-16 17:47:57,174 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /eb/software/OpenMPI/4.1.4-GCC-12.2.0/lib64 (previously undefined) | |
| == 2024-07-16 17:47:57,175 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /eb/software/OpenMPI/4.1.4-GCC-12.2.0/lib64/libmpi.so | |
| == 2024-07-16 17:47:57,175 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /eb/software/OpenMPI/4.1.4-GCC-12.2.0/lib64/libmpi.so (previously undefined) | |
| == 2024-07-16 17:47:57,175 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /eb/software/OpenMPI/4.1.4-GCC-12.2.0/lib64/libmpi.so (previously undefined) | |
| == 2024-07-16 17:47:57,175 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to | |
| == 2024-07-16 17:47:57,175 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
| == 2024-07-16 17:47:57,175 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
| == 2024-07-16 17:47:57,175 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc | |
| == 2024-07-16 17:47:57,175 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
| == 2024-07-16 17:47:57,175 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
| == 2024-07-16 17:47:57,175 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++ | |
| == 2024-07-16 17:47:57,175 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
| == 2024-07-16 17:47:57,175 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
| == 2024-07-16 17:47:57,175 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran | |
| == 2024-07-16 17:47:57,175 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
| == 2024-07-16 17:47:57,175 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
| == 2024-07-16 17:47:57,175 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran | |
| == 2024-07-16 17:47:57,176 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
| == 2024-07-16 17:47:57,176 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
| == 2024-07-16 17:47:57,176 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran | |
| == 2024-07-16 17:47:57,176 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
| == 2024-07-16 17:47:57,176 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
| == 2024-07-16 17:47:57,176 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -march=native | |
| == 2024-07-16 17:47:57,176 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2024-07-16 17:47:57,176 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2024-07-16 17:47:57,176 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno | |
| == 2024-07-16 17:47:57,176 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2024-07-16 17:47:57,176 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2024-07-16 17:47:57,176 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to | |
| == 2024-07-16 17:47:57,176 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) | |
| == 2024-07-16 17:47:57,176 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) | |
| == 2024-07-16 17:47:57,176 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib | |
| == 2024-07-16 17:47:57,176 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib (previously undefined) | |
| == 2024-07-16 17:47:57,177 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib (previously undefined) | |
| == 2024-07-16 17:47:57,177 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_SHARED_LIBS to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so | |
| == 2024-07-16 17:47:57,177 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-07-16 17:47:57,177 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-07-16 17:47:57,177 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a | |
| == 2024-07-16 17:47:57,177 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-07-16 17:47:57,177 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-07-16 17:47:57,177 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_SHARED_LIBS to libscalapack.so,libflexiblas.so,libgfortran.so | |
| == 2024-07-16 17:47:57,177 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-07-16 17:47:57,177 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-07-16 17:47:57,177 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libflexiblas.a,libgfortran.a | |
| == 2024-07-16 17:47:57,177 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-07-16 17:47:57,177 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-07-16 17:47:57,177 toolchain.py:442 DEBUG get_software_version software version 4.1.4 for OpenMPI was found in environment | |
| == 2024-07-16 17:47:57,177 easyblock.py:2146 INFO Using /eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/ as start dir | |
| == 2024-07-16 17:47:57,178 easyblock.py:2149 DEBUG Changed to real build directory /eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/ (start_dir) | |
| == 2024-07-16 17:47:57,178 easyconfig.py:1135 DEBUG Dependencies BEFORE filtering: [{'full_mod_name': 'Compiler/GCCcore/12.2.0/CMake/3.24.3', 'short_mod_name': 'CMake/3.24.3', 'name': 'CMake', 'version': '3.24.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '12.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}] | |
| == 2024-07-16 17:47:57,178 easyconfig.py:1138 DEBUG Dependencies AFTER filtering: [{'full_mod_name': 'Compiler/GCCcore/12.2.0/CMake/3.24.3', 'short_mod_name': 'CMake/3.24.3', 'name': 'CMake', 'version': '3.24.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '12.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}] | |
| == 2024-07-16 17:47:57,178 petsc.py:100 INFO Python included as runtime dependency, so enabling Python support | |
| == 2024-07-16 17:47:57,178 build_log.py:267 INFO ... (took 4 secs) | |
| == 2024-07-16 17:47:57,179 easyblock.py:3948 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
| == 2024-07-16 17:47:57,180 build_log.py:267 INFO configuring... | |
| == 2024-07-16 17:47:57,181 easyblock.py:3957 INFO Starting configure step | |
| == 2024-07-16 17:47:57,181 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-07-16 17:47:57,181 templates.py:201 DEBUG config: PETSc EasyConfig @ /eb/develop/easybuild-easyconfigs/easybuild/easyconfigs/p/PETSc/PETSc-3.19.2-foss-2022b.eb | |
| == 2024-07-16 17:47:57,181 templates.py:231 DEBUG version found in easyconfig is 3.19.2 | |
| == 2024-07-16 17:47:57,181 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2024-07-16 17:47:57,181 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
| == 2024-07-16 17:47:57,181 templates.py:333 DEBUG name: name, config: PETSc | |
| == 2024-07-16 17:47:57,181 templates.py:333 DEBUG name: parallel, config: 12 | |
| == 2024-07-16 17:47:57,182 templates.py:333 DEBUG name: version, config: 3.19.2 | |
| == 2024-07-16 17:47:57,182 templates.py:333 DEBUG name: versionsuffix, config: | |
| == 2024-07-16 17:47:57,182 templates.py:333 DEBUG name: versionprefix, config: | |
| == 2024-07-16 17:47:57,182 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-07-16 17:47:57,182 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-07-16 17:47:57,182 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='petsc', builddir='/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b', github_account='petsc', installdir='/eb/software/PETSc/3.19.2-foss-2022b', module_name='PETSc/3.19.2', mpi_cmd_prefix='mpirun -n 1', name='PETSc', nameletter='P', nameletterlower='p', namelower='petsc', parallel='12', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.8', start_dir='/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/', sysroot='', toolchain_name='foss', toolchain_version='2022b', version='3.19.2', version_major='3', version_major_minor='3.19', version_minor='19', versionprefix='', versionsuffix='' | |
| == 2024-07-16 17:47:57,182 easyblock.py:3965 INFO Running method configure_step part of step configure | |
| == 2024-07-16 17:47:57,182 run.py:180 DEBUG run_cmd: Output of "python -c 'import numpy'" will be logged to /eb/tmp/eb-wysfx34q/easybuild-run_cmd-ep9ocpqv.log | |
| == 2024-07-16 17:47:57,184 run.py:221 DEBUG run_cmd: running cmd python -c 'import numpy' (in /eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2) | |
| == 2024-07-16 17:47:57,184 run.py:247 INFO running cmd: python -c 'import numpy' | |
| == 2024-07-16 17:47:57,279 run.py:687 INFO cmd "python -c 'import numpy'" exited with exit code 0 and output: | |
| == 2024-07-16 17:47:57,279 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2024-07-16 17:47:57,279 run.py:180 DEBUG run_cmd: Output of "python -c 'import mpi4py'" will be logged to /eb/tmp/eb-wysfx34q/easybuild-run_cmd-gg210_5w.log | |
| == 2024-07-16 17:47:57,281 run.py:221 DEBUG run_cmd: running cmd python -c 'import mpi4py' (in /eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2) | |
| == 2024-07-16 17:47:57,281 run.py:247 INFO running cmd: python -c 'import mpi4py' | |
| == 2024-07-16 17:47:57,314 run.py:687 INFO cmd "python -c 'import mpi4py'" exited with exit code 0 and output: | |
| == 2024-07-16 17:47:57,314 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2024-07-16 17:47:57,314 easyconfig.py:1135 DEBUG Dependencies BEFORE filtering: [{'full_mod_name': 'Compiler/GCCcore/12.2.0/CMake/3.24.3', 'short_mod_name': 'CMake/3.24.3', 'name': 'CMake', 'version': '3.24.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '12.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCCcore/12.2.0/Python/3.10.8', 'short_mod_name': 'Python/3.10.8', 'name': 'Python', 'version': '3.10.8', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '12.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCC/12.2.0/SciPy-bundle/2023.02', 'short_mod_name': 'SciPy-bundle/2023.02', 'name': 'SciPy-bundle', 'version': '2023.02', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCC/12.2.0/Boost/1.81.0', 'short_mod_name': 'Boost/1.81.0', 'name': 'Boost', 'version': '1.81.0', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCCcore/12.2.0/METIS/5.1.0', 'short_mod_name': 'METIS/5.1.0', 'name': 'METIS', 'version': '5.1.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '12.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/SCOTCH/7.0.3', 'short_mod_name': 'SCOTCH/7.0.3', 'name': 'SCOTCH', 'version': '7.0.3', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/MUMPS/5.6.1-metis', 'short_mod_name': 'MUMPS/5.6.1-metis', 'name': 'MUMPS', 'version': '5.6.1', 'versionsuffix': '-metis', 'toolchain': {'name': 'foss', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/SuiteSparse/5.13.0-METIS-5.1.0', 'short_mod_name': 'SuiteSparse/5.13.0-METIS-5.1.0', 'name': 'SuiteSparse', 'version': '5.13.0', 'versionsuffix': '-METIS-5.1.0', 'toolchain': {'name': 'foss', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/Hypre/2.27.0', 'short_mod_name': 'Hypre/2.27.0', 'name': 'Hypre', 'version': '2.27.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/ParMETIS/4.0.3', 'short_mod_name': 'ParMETIS/4.0.3', 'name': 'ParMETIS', 'version': '4.0.3', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/SuperLU_DIST/8.1.2', 'short_mod_name': 'SuperLU_DIST/8.1.2', 'name': 'SuperLU_DIST', 'version': '8.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/mpi4py/3.1.4', 'short_mod_name': 'mpi4py/3.1.4', 'name': 'mpi4py', 'version': '3.1.4', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
| == 2024-07-16 17:47:57,314 easyconfig.py:1138 DEBUG Dependencies AFTER filtering: [{'full_mod_name': 'Compiler/GCCcore/12.2.0/CMake/3.24.3', 'short_mod_name': 'CMake/3.24.3', 'name': 'CMake', 'version': '3.24.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '12.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCCcore/12.2.0/Python/3.10.8', 'short_mod_name': 'Python/3.10.8', 'name': 'Python', 'version': '3.10.8', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '12.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCC/12.2.0/SciPy-bundle/2023.02', 'short_mod_name': 'SciPy-bundle/2023.02', 'name': 'SciPy-bundle', 'version': '2023.02', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCC/12.2.0/Boost/1.81.0', 'short_mod_name': 'Boost/1.81.0', 'name': 'Boost', 'version': '1.81.0', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCCcore/12.2.0/METIS/5.1.0', 'short_mod_name': 'METIS/5.1.0', 'name': 'METIS', 'version': '5.1.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '12.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/SCOTCH/7.0.3', 'short_mod_name': 'SCOTCH/7.0.3', 'name': 'SCOTCH', 'version': '7.0.3', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/MUMPS/5.6.1-metis', 'short_mod_name': 'MUMPS/5.6.1-metis', 'name': 'MUMPS', 'version': '5.6.1', 'versionsuffix': '-metis', 'toolchain': {'name': 'foss', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/SuiteSparse/5.13.0-METIS-5.1.0', 'short_mod_name': 'SuiteSparse/5.13.0-METIS-5.1.0', 'name': 'SuiteSparse', 'version': '5.13.0', 'versionsuffix': '-METIS-5.1.0', 'toolchain': {'name': 'foss', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/Hypre/2.27.0', 'short_mod_name': 'Hypre/2.27.0', 'name': 'Hypre', 'version': '2.27.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/ParMETIS/4.0.3', 'short_mod_name': 'ParMETIS/4.0.3', 'name': 'ParMETIS', 'version': '4.0.3', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/SuperLU_DIST/8.1.2', 'short_mod_name': 'SuperLU_DIST/8.1.2', 'name': 'SuperLU_DIST', 'version': '8.1.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/12.2.0/OpenMPI/4.1.4/mpi4py/3.1.4', 'short_mod_name': 'mpi4py/3.1.4', 'name': 'mpi4py', 'version': '3.1.4', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2022b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
| == 2024-07-16 17:47:57,315 environment.py:93 INFO Environment variable PETSC_DIR set to /eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2 (previously undefined) | |
| == 2024-07-16 17:47:57,315 run.py:180 DEBUG run_cmd: Output of " ./configure --prefix=/eb/software/PETSc/3.19.2-foss-2022b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --with-mpi=1 --with-build-step-np=12 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-fftw=1 --with-fftw-lib=[/eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib/libfftw3_mpi.a,libfftw3.a] --with-fftw-include=/eb/software/FFTW.MPI/3.3.10-gompi-2022b/include --with-scalapack=1 --with-scalapack-lib=[/eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib/libscalapack.a,libflexiblas.a,libgfortran.a] --with-blas-lapack-lib=[/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib/libflexiblas.a,libgfortran.a] --with-python=1 --with-python-dir=/eb/software/Python/3.10.8-GCCcore-12.2.0 --with-boost=1 --with-boost-dir=/eb/software/Boost/1.81.0-GCC-12.2.0 --with-metis=1 --with-metis-dir=/eb/software/METIS/5.1.0-GCCcore-12.2.0 --with-mumps=1 --with-mumps-dir=/eb/software/MUMPS/5.6.1-foss-2022b-metis --with-hypre=1 --with-hypre-dir=/eb/software/Hypre/2.27.0-foss-2022b --with-parmetis=1 --with-parmetis-dir=/eb/software/ParMETIS/4.0.3-gompi-2022b --with-superlu_dist=1 --with-superlu_dist-dir=/eb/software/SuperLU_DIST/8.1.2-foss-2022b --with-ptscotch=1 --with-ptscotch-include=[/eb/software/SCOTCH/7.0.3-gompi-2022b/include] --with-ptscotch-lib=[/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptesmumps.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotchparmetisv3.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotch.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotcherr.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libesmumps.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libscotch.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libscotcherr.a] --with-suitesparse=1 --with-suitesparse-include=[/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include/suitesparse] --with-suitesparse-lib=[/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libumfpack.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libklu.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libspqr.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcholmod.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libbtf.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libccolamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcolamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcxsparse.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libldl.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/librbio.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libsliplu.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libamd.so] " will be logged to /eb/tmp/eb-wysfx34q/easybuild-run_cmd-ozqwxeem.log | |
| == 2024-07-16 17:47:57,318 run.py:221 DEBUG run_cmd: running cmd ./configure --prefix=/eb/software/PETSc/3.19.2-foss-2022b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --with-mpi=1 --with-build-step-np=12 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-fftw=1 --with-fftw-lib=[/eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib/libfftw3_mpi.a,libfftw3.a] --with-fftw-include=/eb/software/FFTW.MPI/3.3.10-gompi-2022b/include --with-scalapack=1 --with-scalapack-lib=[/eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib/libscalapack.a,libflexiblas.a,libgfortran.a] --with-blas-lapack-lib=[/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib/libflexiblas.a,libgfortran.a] --with-python=1 --with-python-dir=/eb/software/Python/3.10.8-GCCcore-12.2.0 --with-boost=1 --with-boost-dir=/eb/software/Boost/1.81.0-GCC-12.2.0 --with-metis=1 --with-metis-dir=/eb/software/METIS/5.1.0-GCCcore-12.2.0 --with-mumps=1 --with-mumps-dir=/eb/software/MUMPS/5.6.1-foss-2022b-metis --with-hypre=1 --with-hypre-dir=/eb/software/Hypre/2.27.0-foss-2022b --with-parmetis=1 --with-parmetis-dir=/eb/software/ParMETIS/4.0.3-gompi-2022b --with-superlu_dist=1 --with-superlu_dist-dir=/eb/software/SuperLU_DIST/8.1.2-foss-2022b --with-ptscotch=1 --with-ptscotch-include=[/eb/software/SCOTCH/7.0.3-gompi-2022b/include] --with-ptscotch-lib=[/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptesmumps.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotchparmetisv3.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotch.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotcherr.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libesmumps.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libscotch.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libscotcherr.a] --with-suitesparse=1 --with-suitesparse-include=[/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include/suitesparse] --with-suitesparse-lib=[/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libumfpack.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libklu.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libspqr.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcholmod.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libbtf.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libccolamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcolamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcxsparse.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libldl.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/librbio.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libsliplu.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libamd.so] (in /eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2) | |
| == 2024-07-16 17:47:57,318 run.py:247 INFO running cmd: ./configure --prefix=/eb/software/PETSc/3.19.2-foss-2022b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --with-mpi=1 --with-build-step-np=12 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-fftw=1 --with-fftw-lib=[/eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib/libfftw3_mpi.a,libfftw3.a] --with-fftw-include=/eb/software/FFTW.MPI/3.3.10-gompi-2022b/include --with-scalapack=1 --with-scalapack-lib=[/eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib/libscalapack.a,libflexiblas.a,libgfortran.a] --with-blas-lapack-lib=[/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib/libflexiblas.a,libgfortran.a] --with-python=1 --with-python-dir=/eb/software/Python/3.10.8-GCCcore-12.2.0 --with-boost=1 --with-boost-dir=/eb/software/Boost/1.81.0-GCC-12.2.0 --with-metis=1 --with-metis-dir=/eb/software/METIS/5.1.0-GCCcore-12.2.0 --with-mumps=1 --with-mumps-dir=/eb/software/MUMPS/5.6.1-foss-2022b-metis --with-hypre=1 --with-hypre-dir=/eb/software/Hypre/2.27.0-foss-2022b --with-parmetis=1 --with-parmetis-dir=/eb/software/ParMETIS/4.0.3-gompi-2022b --with-superlu_dist=1 --with-superlu_dist-dir=/eb/software/SuperLU_DIST/8.1.2-foss-2022b --with-ptscotch=1 --with-ptscotch-include=[/eb/software/SCOTCH/7.0.3-gompi-2022b/include] --with-ptscotch-lib=[/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptesmumps.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotchparmetisv3.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotch.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotcherr.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libesmumps.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libscotch.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libscotcherr.a] --with-suitesparse=1 --with-suitesparse-include=[/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include/suitesparse] --with-suitesparse-lib=[/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libumfpack.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libklu.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libspqr.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcholmod.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libbtf.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libccolamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcolamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcxsparse.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libldl.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/librbio.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libsliplu.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libamd.so] | |
| == 2024-07-16 17:47:57,822 run.py:687 INFO cmd " ./configure --prefix=/eb/software/PETSc/3.19.2-foss-2022b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --with-mpi=1 --with-build-step-np=12 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-fftw=1 --with-fftw-lib=[/eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib/libfftw3_mpi.a,libfftw3.a] --with-fftw-include=/eb/software/FFTW.MPI/3.3.10-gompi-2022b/include --with-scalapack=1 --with-scalapack-lib=[/eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib/libscalapack.a,libflexiblas.a,libgfortran.a] --with-blas-lapack-lib=[/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib/libflexiblas.a,libgfortran.a] --with-python=1 --with-python-dir=/eb/software/Python/3.10.8-GCCcore-12.2.0 --with-boost=1 --with-boost-dir=/eb/software/Boost/1.81.0-GCC-12.2.0 --with-metis=1 --with-metis-dir=/eb/software/METIS/5.1.0-GCCcore-12.2.0 --with-mumps=1 --with-mumps-dir=/eb/software/MUMPS/5.6.1-foss-2022b-metis --with-hypre=1 --with-hypre-dir=/eb/software/Hypre/2.27.0-foss-2022b --with-parmetis=1 --with-parmetis-dir=/eb/software/ParMETIS/4.0.3-gompi-2022b --with-superlu_dist=1 --with-superlu_dist-dir=/eb/software/SuperLU_DIST/8.1.2-foss-2022b --with-ptscotch=1 --with-ptscotch-include=[/eb/software/SCOTCH/7.0.3-gompi-2022b/include] --with-ptscotch-lib=[/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptesmumps.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotchparmetisv3.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotch.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotcherr.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libesmumps.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libscotch.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libscotcherr.a] --with-suitesparse=1 --with-suitesparse-include=[/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include/suitesparse] --with-suitesparse-lib=[/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libumfpack.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libklu.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libspqr.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcholmod.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libbtf.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libccolamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcolamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcxsparse.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libldl.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/librbio.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libsliplu.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libamd.so] " exited with exit code 0 and output: | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/configure.py", line 458, in petsc_configure | |
| framework = config.framework.Framework(['--configModules=PETSc.Configure','--optionsModule=config.compilerOptions']+sys.argv[1:], loadArgDB = 0) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/framework.py", line 101, in __init__ | |
| self.createChildren() | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/framework.py", line 338, in createChildren | |
| self.getChild(moduleName) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/framework.py", line 323, in getChild | |
| config.setupDependencies(self) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/PETSc/Configure.py", line 103, in setupDependencies | |
| obj = self.registerPythonFile(package,'config.packages') | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/PETSc/Configure.py", line 59, in registerPythonFile | |
| utilityObj = self.framework.require(directory+utilityName, self) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/framework.py", line 349, in require | |
| return self.requireModule(self.getChild(moduleName, keywordArgs), depChild) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/framework.py", line 323, in getChild | |
| config.setupDependencies(self) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/packages/MFEM.py", line 32, in setupDependencies | |
| self.slepc = framework.require('config.packages.slepc',self) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/framework.py", line 349, in require | |
| return self.requireModule(self.getChild(moduleName, keywordArgs), depChild) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/framework.py", line 323, in getChild | |
| config.setupDependencies(self) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/packages/slepc.py", line 33, in setupDependencies | |
| self.SuiteSparse = framework.require('config.packages.SuiteSparse',self) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/framework.py", line 349, in require | |
| return self.requireModule(self.getChild(moduleName, keywordArgs), depChild) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/framework.py", line 321, in getChild | |
| config.setup() | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/base.py", line 94, in setup | |
| script.Script.setup(self) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/script.py", line 108, in setup | |
| logger.Logger.setup(self) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/logger.py", line 158, in setup | |
| args.ArgumentProcessor.setup(self) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/args.py", line 76, in setup | |
| self.setupArguments(self.argDB) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/script.py", line 92, in setupArguments | |
| self.setupHelp(self.help) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/packages/SuiteSparse.py", line 27, in setupHelp | |
| config.package.Package.setupHelp(self, help) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/config/package.py", line 179, in setupHelp | |
| help.addArgument(self.PACKAGE,'-with-'+self.package+'-include=<dirs>',nargs.ArgDirList(None,None,'Indicate the directory of the '+self.name+' include files')) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/help.py", line 108, in addArgument | |
| self.argDB.setType(self.getArgName(name), argType, forceLocal = 1) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/RDict.py", line 221, in setType | |
| value.setValue(v.getValue()) | |
| File "/eb/tmp/eb-build/PETSc/3.19.2/foss-2022b/petsc-3.19.2/config/BuildSystem/nargs.py", line 315, in setValue | |
| raise ValueError('Invalid directory: '+str(dir)+' for key '+str(self.key)) | |
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | |
| The version of PETSc you are using is out-of-date, we recommend updating to the new release | |
| Available Version: 3.21.3 Installed Version: 3.19.2 | |
| https://petsc.org/release/download/ | |
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | |
| ********************************************************************************************* | |
| TypeError or ValueError possibly related to ERROR in COMMAND LINE ARGUMENT while running ./configure | |
| --------------------------------------------------------------------------------------------- | |
| Invalid directory: | |
| /eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include/suitesparse for key | |
| with-suitesparse-include | |
| ********************************************************************************************* | |
| == 2024-07-16 17:47:57,822 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2024-07-16 17:47:57,822 run.py:700 WARNING Found 1 potential error (some may be harmless) in output of ./configure --prefix=/eb/software/PETSc/3.19.2-foss-2022b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --with-mpi=1 --with-build-step-np=12 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-fftw=1 --with-fftw-lib=[/eb/software/FFTW.MPI/3.3.10-gompi-2022b/lib/libfftw3_mpi.a,libfftw3.a] --with-fftw-include=/eb/software/FFTW.MPI/3.3.10-gompi-2022b/include --with-scalapack=1 --with-scalapack-lib=[/eb/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib/libscalapack.a,libflexiblas.a,libgfortran.a] --with-blas-lapack-lib=[/eb/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib/libflexiblas.a,libgfortran.a] --with-python=1 --with-python-dir=/eb/software/Python/3.10.8-GCCcore-12.2.0 --with-boost=1 --with-boost-dir=/eb/software/Boost/1.81.0-GCC-12.2.0 --with-metis=1 --with-metis-dir=/eb/software/METIS/5.1.0-GCCcore-12.2.0 --with-mumps=1 --with-mumps-dir=/eb/software/MUMPS/5.6.1-foss-2022b-metis --with-hypre=1 --with-hypre-dir=/eb/software/Hypre/2.27.0-foss-2022b --with-parmetis=1 --with-parmetis-dir=/eb/software/ParMETIS/4.0.3-gompi-2022b --with-superlu_dist=1 --with-superlu_dist-dir=/eb/software/SuperLU_DIST/8.1.2-foss-2022b --with-ptscotch=1 --with-ptscotch-include=[/eb/software/SCOTCH/7.0.3-gompi-2022b/include] --with-ptscotch-lib=[/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptesmumps.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotchparmetisv3.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotch.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libptscotcherr.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libesmumps.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libscotch.a,/eb/software/SCOTCH/7.0.3-gompi-2022b/lib/libscotcherr.a] --with-suitesparse=1 --with-suitesparse-include=[/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/include/suitesparse] --with-suitesparse-lib=[/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libumfpack.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libklu.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libspqr.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcholmod.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libbtf.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libccolamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcolamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcxsparse.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libldl.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/librbio.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libsliplu.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libcamd.so,/eb/software/SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0/lib/libamd.so] : | |
| TypeError or ValueError possibly related to ERROR in COMMAND LINE ARGUMENT while running ./configure | |
| == 2024-07-16 17:47:57,852 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:126 in __init__): Error(s) detected in configure output! (at easybuild/easyblocks/petsc.py:301 in configure_step) | |
| == 2024-07-16 17:47:57,852 build_log.py:267 INFO ... (took < 1 sec) | |
| == 2024-07-16 17:47:57,853 config.py:700 DEBUG software install path as specified by 'installpath' and 'subdir_software': /eb/software | |
| == 2024-07-16 17:47:57,853 filetools.py:2023 INFO Removing lock /eb/software/.locks/_eb_software_PETSc_3.19.2-foss-2022b.lock... | |
| == 2024-07-16 17:47:57,854 filetools.py:383 INFO Path /eb/software/.locks/_eb_software_PETSc_3.19.2-foss-2022b.lock successfully removed. | |
| == 2024-07-16 17:47:57,854 filetools.py:2027 INFO Lock removed: /eb/software/.locks/_eb_software_PETSc_3.19.2-foss-2022b.lock | |
| == 2024-07-16 17:47:57,854 easyblock.py:4292 WARNING build failed (first 300 chars): Error(s) detected in configure output! | |
| == 2024-07-16 17:47:57,854 easyblock.py:328 INFO Closing log for application name PETSc version 3.19.2 |
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