Skip to content

Instantly share code, notes, and snippets.

@will-moore
Created April 24, 2026 14:02
Show Gist options
  • Select an option

  • Save will-moore/e7ce2443a86da62ddfffa46c1037330f to your computer and use it in GitHub Desktop.

Select an option

Save will-moore/e7ce2443a86da62ddfffa46c1037330f to your computer and use it in GitHub Desktop.
{
"version": 9,
"panels": [
{
"x": 25.791648388324507,
"y": 127.03721218834659,
"width": 398.43134330405206,
"height": 198.33333333333331,
"zoom": 100,
"dx": 0,
"dy": 0,
"labels": [
{
"text": "BIA",
"size": 14,
"position": "top",
"color": "000000"
}
],
"deltaT": [],
"rotation": 0,
"selected": true,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://uk1s3.embassy.ebi.ac.uk/bia-zarr-test/S-BIAD425/IM480.zarr/0",
"name": "0",
"sizeZ": 57,
"theZ": 28,
"sizeT": 1,
"theT": 0,
"channels": [
{
"label": "ChS1",
"active": true,
"color": "FFFF00",
"window": {
"min": 0,
"max": 57,
"start": 5.55,
"end": 27.56
}
},
{
"label": "Ch2",
"active": true,
"color": "FF0000",
"window": {
"min": 0,
"max": 255,
"start": 0,
"end": 217
}
}
],
"orig_width": 1024,
"orig_height": 512,
"pixelsType": "uint64",
"zarr": {
"multiscales": [
{
"metadata": {
"method": "loci.common.image.SimpleImageScaler",
"version": "Bio-Formats 6.10.1"
},
"axes": [
{
"name": "t",
"type": "time"
},
{
"name": "c",
"type": "channel"
},
{
"unit": "micrometer",
"name": "z",
"type": "space"
},
{
"unit": "micrometer",
"name": "y",
"type": "space"
},
{
"unit": "micrometer",
"name": "x",
"type": "space"
}
],
"name": "",
"datasets": [
{
"path": "0",
"coordinateTransformations": [
{
"scale": [
1,
1,
0.5,
0.34594409893824557,
0.34594409893824557
],
"type": "scale"
}
]
},
{
"path": "1",
"coordinateTransformations": [
{
"scale": [
1,
1,
0.5,
0.6918881978764911,
0.6918881978764911
],
"type": "scale"
}
]
},
{
"path": "2",
"coordinateTransformations": [
{
"scale": [
1,
1,
0.5,
1.3837763957529823,
1.3837763957529823
],
"type": "scale"
}
]
}
],
"version": "0.4"
}
],
"arrays": {
"0": {
"shape": [
1,
2,
57,
512,
1024
],
"dtype": "uint8"
},
"1": {
"shape": [
1,
2,
57,
256,
512
],
"dtype": "uint8"
},
"2": {
"shape": [
1,
2,
57,
128,
256
],
"dtype": "uint8"
}
},
"zarr_version": 2,
"version": "0.4"
},
"pixel_size_x": 0.34594409893824557,
"pixel_size_y": 0.34594409893824557,
"pixel_size_y_unit": "MICROMETER",
"pixel_size_y_symbol": "µm",
"pixel_size_z": 0.5,
"pixel_size_z_unit": "MICROMETER",
"pixel_size_z_symbol": "µm"
},
{
"x": 25.766249292563394,
"y": 363.11481358310635,
"width": 265.44612794612794,
"height": 117.60362403571389,
"zoom": 100,
"dx": 0,
"dy": 0,
"labels": [
{
"text": "BIA",
"size": 14,
"position": "top",
"color": "000000"
}
],
"deltaT": [],
"rotation": 0,
"selected": false,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/S-BIAD582/IM1754/IM1754.zarr/0",
"name": "0",
"sizeZ": 1,
"theZ": 0,
"sizeT": 1,
"theT": 0,
"channels": [
{
"label": "Channel 0",
"active": true,
"color": "FF0000",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 1",
"active": false,
"color": "00FF00",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 2",
"active": false,
"color": "0000FF",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 3",
"active": false,
"color": "FFFF00",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 4",
"active": true,
"color": "00FFFF",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 22489
}
}
],
"orig_width": 1091,
"orig_height": 485,
"pixelsType": "uint8",
"zarr": {
"multiscales": [
{
"datasets": [
{
"path": "0",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
0.46875000010913936,
0.46875000010913936
],
"type": "scale"
}
]
},
{
"path": "1",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
0.9375000002182787,
0.9375000002182787
],
"type": "scale"
}
]
},
{
"path": "2",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
1.8750000004365575,
1.8750000004365575
],
"type": "scale"
}
]
},
{
"path": "3",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
3.750000000873115,
3.750000000873115
],
"type": "scale"
}
]
}
],
"metadata": {
"method": "loci.common.image.SimpleImageScaler",
"version": "Bio-Formats 6.10.1"
},
"axes": [
{
"name": "t",
"type": "time",
"unit": null
},
{
"name": "c",
"type": "channel",
"unit": null
},
{
"name": "z",
"type": "space",
"unit": null
},
{
"name": "y",
"type": "space",
"unit": "micrometer"
},
{
"name": "x",
"type": "space",
"unit": "micrometer"
}
],
"version": "0.4"
}
],
"arrays": {
"0": {
"shape": [
1,
5,
1,
485,
1091
],
"dtype": "uint16"
},
"1": {
"shape": [
1,
5,
1,
242,
545
],
"dtype": "uint16"
},
"2": {
"shape": [
1,
5,
1,
121,
272
],
"dtype": "uint16"
},
"3": {
"shape": [
1,
5,
1,
60,
136
],
"dtype": "uint16"
}
},
"zarr_version": 2,
"version": "0.4"
},
"pixel_size_x": 0.46875000010913936,
"pixel_size_y": 0.46875000010913936,
"pixel_size_y_unit": "MICROMETER",
"pixel_size_y_symbol": "µm"
},
{
"x": 433.9062502561416,
"y": 127.03721218834659,
"width": 133.70889131538667,
"height": 198.33333333333331,
"zoom": 67.53246753246754,
"dx": 0,
"dy": 0,
"labels": [
{
"text": "BioFile Finder",
"size": 14,
"position": "top",
"color": "000000"
}
],
"deltaT": [
0
],
"rotation": 90,
"selected": false,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://animatedcell-test-data.s3.us-west-2.amazonaws.com/variance/1002.zarr",
"name": "/",
"sizeZ": 50,
"theZ": 23,
"sizeT": 1,
"theT": 0,
"channels": [
{
"label": "Membrane",
"active": true,
"color": "00FFFF",
"window": {
"min": 0,
"max": 1,
"start": 874,
"end": 1957
}
},
{
"label": "Labeled Structure",
"active": true,
"color": "FFFF00",
"window": {
"min": 0,
"max": 1,
"start": 396,
"end": 633
}
},
{
"label": "DNA",
"active": false,
"color": "ffffffff",
"window": {
"min": 0,
"max": 1,
"start": 0,
"end": 1
}
},
{
"label": "Bright field",
"active": false,
"color": "ffffffff",
"window": {
"min": 0,
"max": 1,
"start": 0,
"end": 1
}
},
{
"label": "SEG_STRUCT",
"active": false,
"color": "ffffffff",
"window": {
"min": 0,
"max": 1,
"start": 0,
"end": 1
}
},
{
"label": "SEG_Memb",
"active": false,
"color": "ffffffff",
"window": {
"min": 0,
"max": 1,
"start": 0,
"end": 1
}
},
{
"label": "SEG_DNA",
"active": false,
"color": "ffffffff",
"window": {
"min": 0,
"max": 1,
"start": 0,
"end": 1
}
},
{
"label": "Con_Memb",
"active": false,
"color": "ffffffff",
"window": {
"min": 0,
"max": 1,
"start": 0,
"end": 1
}
},
{
"label": "Con_DNA",
"active": false,
"color": "ffffffff",
"window": {
"min": 0,
"max": 1,
"start": 0,
"end": 1
}
}
],
"orig_width": 924,
"orig_height": 624,
"pixelsType": "uint8",
"zarr": {
"multiscales": [
{
"axes": [
{
"name": "t",
"type": "time",
"unit": "millisecond"
},
{
"name": "c",
"type": "channel"
},
{
"name": "z",
"type": "space",
"unit": "micrometer"
},
{
"name": "y",
"type": "space",
"unit": "micrometer"
},
{
"name": "x",
"type": "space",
"unit": "micrometer"
}
],
"datasets": [
{
"coordinateTransformations": [
{
"scale": [
1,
1,
0.29,
0.1083333333333333,
0.1083333333333333
],
"type": "scale"
}
],
"path": "0"
},
{
"coordinateTransformations": [
{
"scale": [
1,
1,
0.29,
0.2166666666666666,
0.2166666666666666
],
"type": "scale"
}
],
"path": "1"
},
{
"coordinateTransformations": [
{
"scale": [
1,
1,
0.29,
0.4333333333333332,
0.4333333333333332
],
"type": "scale"
}
],
"path": "2"
}
],
"name": "/",
"version": "0.4"
}
],
"arrays": {
"0": {
"shape": [
1,
9,
50,
624,
924
],
"dtype": "uint16"
},
"1": {
"shape": [
1,
9,
50,
312,
462
],
"dtype": "uint16"
},
"2": {
"shape": [
1,
9,
50,
156,
231
],
"dtype": "uint16"
}
},
"zarr_version": 2,
"version": "0.4"
},
"pixel_size_x": 0.1083333333333333,
"pixel_size_y": 0.1083333333333333,
"pixel_size_y_unit": "MICROMETER",
"pixel_size_y_symbol": "µm",
"pixel_size_z": 0.29,
"pixel_size_z_unit": "MICROMETER",
"pixel_size_z_symbol": "µm"
},
{
"x": 25.766249292563394,
"y": 486.59861882060585,
"width": 265.44612794612794,
"height": 117.603624035714,
"zoom": 100,
"dx": 0,
"dy": 0,
"labels": [],
"deltaT": [],
"rotation": 0,
"selected": false,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/S-BIAD582/IM1754/IM1754.zarr/0",
"name": "0",
"sizeZ": 1,
"theZ": 0,
"sizeT": 1,
"theT": 0,
"channels": [
{
"label": "Channel 0",
"active": false,
"color": "FF0000",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 1",
"active": true,
"color": "00FF00",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 2",
"active": false,
"color": "0000FF",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 3",
"active": true,
"color": "FFFF00",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 4",
"active": false,
"color": "00FFFF",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 22489
}
}
],
"orig_width": 1091,
"orig_height": 485,
"pixelsType": "uint8",
"zarr": {
"multiscales": [
{
"datasets": [
{
"path": "0",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
0.46875000010913936,
0.46875000010913936
],
"type": "scale"
}
]
},
{
"path": "1",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
0.9375000002182787,
0.9375000002182787
],
"type": "scale"
}
]
},
{
"path": "2",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
1.8750000004365575,
1.8750000004365575
],
"type": "scale"
}
]
},
{
"path": "3",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
3.750000000873115,
3.750000000873115
],
"type": "scale"
}
]
}
],
"metadata": {
"method": "loci.common.image.SimpleImageScaler",
"version": "Bio-Formats 6.10.1"
},
"axes": [
{
"name": "t",
"type": "time",
"unit": null
},
{
"name": "c",
"type": "channel",
"unit": null
},
{
"name": "z",
"type": "space",
"unit": null
},
{
"name": "y",
"type": "space",
"unit": "micrometer"
},
{
"name": "x",
"type": "space",
"unit": "micrometer"
}
],
"version": "0.4"
}
],
"arrays": {
"0": {
"shape": [
1,
5,
1,
485,
1091
],
"dtype": "uint16"
},
"1": {
"shape": [
1,
5,
1,
242,
545
],
"dtype": "uint16"
},
"2": {
"shape": [
1,
5,
1,
121,
272
],
"dtype": "uint16"
},
"3": {
"shape": [
1,
5,
1,
60,
136
],
"dtype": "uint16"
}
},
"zarr_version": 2,
"version": "0.4"
},
"pixel_size_x": 0.46875000010913936,
"pixel_size_y": 0.46875000010913936,
"pixel_size_y_unit": "MICROMETER",
"pixel_size_y_symbol": "µm"
},
{
"x": 25.766249292563394,
"y": 610.0824240581055,
"width": 265.44612794612794,
"height": 117.60362403571389,
"zoom": 100,
"dx": 0,
"dy": 0,
"labels": [],
"deltaT": [],
"rotation": 0,
"selected": false,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/S-BIAD582/IM1754/IM1754.zarr/0",
"name": "0",
"sizeZ": 1,
"theZ": 0,
"sizeT": 1,
"theT": 0,
"channels": [
{
"label": "Channel 0",
"active": false,
"color": "FF0000",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 1",
"active": false,
"color": "00FF00",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 2",
"active": false,
"color": "0000FF",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 3",
"active": true,
"color": "FFFF00",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 14055
}
},
{
"label": "Channel 4",
"active": false,
"color": "00FFFF",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 22489
}
}
],
"orig_width": 1091,
"orig_height": 485,
"pixelsType": "uint8",
"zarr": {
"multiscales": [
{
"datasets": [
{
"path": "0",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
0.46875000010913936,
0.46875000010913936
],
"type": "scale"
}
]
},
{
"path": "1",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
0.9375000002182787,
0.9375000002182787
],
"type": "scale"
}
]
},
{
"path": "2",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
1.8750000004365575,
1.8750000004365575
],
"type": "scale"
}
]
},
{
"path": "3",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
3.750000000873115,
3.750000000873115
],
"type": "scale"
}
]
}
],
"metadata": {
"method": "loci.common.image.SimpleImageScaler",
"version": "Bio-Formats 6.10.1"
},
"axes": [
{
"name": "t",
"type": "time",
"unit": null
},
{
"name": "c",
"type": "channel",
"unit": null
},
{
"name": "z",
"type": "space",
"unit": null
},
{
"name": "y",
"type": "space",
"unit": "micrometer"
},
{
"name": "x",
"type": "space",
"unit": "micrometer"
}
],
"version": "0.4"
}
],
"arrays": {
"0": {
"shape": [
1,
5,
1,
485,
1091
],
"dtype": "uint16"
},
"1": {
"shape": [
1,
5,
1,
242,
545
],
"dtype": "uint16"
},
"2": {
"shape": [
1,
5,
1,
121,
272
],
"dtype": "uint16"
},
"3": {
"shape": [
1,
5,
1,
60,
136
],
"dtype": "uint16"
}
},
"zarr_version": 2,
"version": "0.4"
},
"pixel_size_x": 0.46875000010913936,
"pixel_size_y": 0.46875000010913936,
"pixel_size_y_unit": "MICROMETER",
"pixel_size_y_symbol": "µm"
},
{
"x": 304.4846836359978,
"y": 363.11481358310635,
"width": 265.44612794612794,
"height": 117.60362403571389,
"zoom": 100,
"dx": 0,
"dy": 0,
"labels": [],
"deltaT": [],
"rotation": 0,
"selected": false,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/S-BIAD582/IM1754/IM1754.zarr/0",
"name": "0",
"sizeZ": 1,
"theZ": 0,
"sizeT": 1,
"theT": 0,
"channels": [
{
"label": "Channel 0",
"active": false,
"color": "FF0000",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 1",
"active": false,
"color": "00FF00",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 2",
"active": true,
"color": "0000FF",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 21210
}
},
{
"label": "Channel 3",
"active": false,
"color": "FFFF00",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 4",
"active": false,
"color": "00FFFF",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 22489
}
}
],
"orig_width": 1091,
"orig_height": 485,
"pixelsType": "uint8",
"zarr": {
"multiscales": [
{
"datasets": [
{
"path": "0",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
0.46875000010913936,
0.46875000010913936
],
"type": "scale"
}
]
},
{
"path": "1",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
0.9375000002182787,
0.9375000002182787
],
"type": "scale"
}
]
},
{
"path": "2",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
1.8750000004365575,
1.8750000004365575
],
"type": "scale"
}
]
},
{
"path": "3",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
3.750000000873115,
3.750000000873115
],
"type": "scale"
}
]
}
],
"metadata": {
"method": "loci.common.image.SimpleImageScaler",
"version": "Bio-Formats 6.10.1"
},
"axes": [
{
"name": "t",
"type": "time",
"unit": null
},
{
"name": "c",
"type": "channel",
"unit": null
},
{
"name": "z",
"type": "space",
"unit": null
},
{
"name": "y",
"type": "space",
"unit": "micrometer"
},
{
"name": "x",
"type": "space",
"unit": "micrometer"
}
],
"version": "0.4"
}
],
"arrays": {
"0": {
"shape": [
1,
5,
1,
485,
1091
],
"dtype": "uint16"
},
"1": {
"shape": [
1,
5,
1,
242,
545
],
"dtype": "uint16"
},
"2": {
"shape": [
1,
5,
1,
121,
272
],
"dtype": "uint16"
},
"3": {
"shape": [
1,
5,
1,
60,
136
],
"dtype": "uint16"
}
},
"zarr_version": 2,
"version": "0.4"
},
"pixel_size_x": 0.46875000010913936,
"pixel_size_y": 0.46875000010913936,
"pixel_size_y_unit": "MICROMETER",
"pixel_size_y_symbol": "µm"
},
{
"x": 304.4846836359978,
"y": 486.59861882060585,
"width": 265.44612794612794,
"height": 117.603624035714,
"zoom": 100,
"dx": 0,
"dy": 0,
"labels": [],
"deltaT": [],
"rotation": 0,
"selected": false,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/S-BIAD582/IM1754/IM1754.zarr/0",
"name": "0",
"sizeZ": 1,
"theZ": 0,
"sizeT": 1,
"theT": 0,
"channels": [
{
"label": "Channel 0",
"active": true,
"color": "FF0000",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 1",
"active": false,
"color": "00FF00",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 2",
"active": false,
"color": "0000FF",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 3",
"active": false,
"color": "FFFF00",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 4",
"active": true,
"color": "00FFFF",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 22489
}
}
],
"orig_width": 1091,
"orig_height": 485,
"pixelsType": "uint8",
"zarr": {
"multiscales": [
{
"datasets": [
{
"path": "0",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
0.46875000010913936,
0.46875000010913936
],
"type": "scale"
}
]
},
{
"path": "1",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
0.9375000002182787,
0.9375000002182787
],
"type": "scale"
}
]
},
{
"path": "2",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
1.8750000004365575,
1.8750000004365575
],
"type": "scale"
}
]
},
{
"path": "3",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
3.750000000873115,
3.750000000873115
],
"type": "scale"
}
]
}
],
"metadata": {
"method": "loci.common.image.SimpleImageScaler",
"version": "Bio-Formats 6.10.1"
},
"axes": [
{
"name": "t",
"type": "time",
"unit": null
},
{
"name": "c",
"type": "channel",
"unit": null
},
{
"name": "z",
"type": "space",
"unit": null
},
{
"name": "y",
"type": "space",
"unit": "micrometer"
},
{
"name": "x",
"type": "space",
"unit": "micrometer"
}
],
"version": "0.4"
}
],
"arrays": {
"0": {
"shape": [
1,
5,
1,
485,
1091
],
"dtype": "uint16"
},
"1": {
"shape": [
1,
5,
1,
242,
545
],
"dtype": "uint16"
},
"2": {
"shape": [
1,
5,
1,
121,
272
],
"dtype": "uint16"
},
"3": {
"shape": [
1,
5,
1,
60,
136
],
"dtype": "uint16"
}
},
"zarr_version": 2,
"version": "0.4"
},
"pixel_size_x": 0.46875000010913936,
"pixel_size_y": 0.46875000010913936,
"pixel_size_y_unit": "MICROMETER",
"pixel_size_y_symbol": "µm"
},
{
"x": 304.4846836359978,
"y": 610.0824240581055,
"width": 265.44612794612794,
"height": 117.60362403571389,
"zoom": 100,
"dx": 0,
"dy": 0,
"labels": [],
"deltaT": [],
"rotation": 0,
"selected": false,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/S-BIAD582/IM1754/IM1754.zarr/0",
"name": "0",
"sizeZ": 1,
"theZ": 0,
"sizeT": 1,
"theT": 0,
"channels": [
{
"label": "Channel 0",
"active": true,
"color": "FF0000",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 51610
}
},
{
"label": "Channel 1",
"active": true,
"color": "00FF00",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 35213
}
},
{
"label": "Channel 2",
"active": false,
"color": "0000FF",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 65535
}
},
{
"label": "Channel 3",
"active": true,
"color": "FFFF00",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 28085
}
},
{
"label": "Channel 4",
"active": true,
"color": "00FFFF",
"window": {
"min": 0,
"max": 65535,
"start": 0,
"end": 22489
}
}
],
"orig_width": 1091,
"orig_height": 485,
"pixelsType": "uint8",
"zarr": {
"multiscales": [
{
"datasets": [
{
"path": "0",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
0.46875000010913936,
0.46875000010913936
],
"type": "scale"
}
]
},
{
"path": "1",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
0.9375000002182787,
0.9375000002182787
],
"type": "scale"
}
]
},
{
"path": "2",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
1.8750000004365575,
1.8750000004365575
],
"type": "scale"
}
]
},
{
"path": "3",
"coordinateTransformations": [
{
"scale": [
1,
1,
1,
3.750000000873115,
3.750000000873115
],
"type": "scale"
}
]
}
],
"metadata": {
"method": "loci.common.image.SimpleImageScaler",
"version": "Bio-Formats 6.10.1"
},
"axes": [
{
"name": "t",
"type": "time",
"unit": null
},
{
"name": "c",
"type": "channel",
"unit": null
},
{
"name": "z",
"type": "space",
"unit": null
},
{
"name": "y",
"type": "space",
"unit": "micrometer"
},
{
"name": "x",
"type": "space",
"unit": "micrometer"
}
],
"version": "0.4"
}
],
"arrays": {
"0": {
"shape": [
1,
5,
1,
485,
1091
],
"dtype": "uint16"
},
"1": {
"shape": [
1,
5,
1,
242,
545
],
"dtype": "uint16"
},
"2": {
"shape": [
1,
5,
1,
121,
272
],
"dtype": "uint16"
},
"3": {
"shape": [
1,
5,
1,
60,
136
],
"dtype": "uint16"
}
},
"zarr_version": 2,
"version": "0.4"
},
"pixel_size_x": 0.46875000010913936,
"pixel_size_y": 0.46875000010913936,
"pixel_size_y_unit": "MICROMETER",
"pixel_size_y_symbol": "µm"
}
],
"paper_width": 595,
"paper_height": 842,
"page_size": "A4",
"page_count": 1,
"paper_spacing": 50,
"page_col_count": 1,
"height_mm": 297,
"width_mm": 210,
"orientation": "vertical",
"legend": "",
"legend_collapsed": true,
"page_color": "FFFFFF",
"figureName": "NGFF_samples_BIA_BFF"
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment