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nsc_private-wc-qa-full-step2-v1.py
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| __author__ = "Puri Phakmongkol" | |
| __author_email__ = "me@puri.in.th" | |
| """ | |
| * Thesis | |
| * | |
| * Created date : 15/06/2021 | |
| * | |
| + o + o | |
| + o + + | |
| o + | |
| o + + + | |
| + o o + o | |
| -_-_-_-_-_-_-_,------, o | |
| _-_-_-_-_-_-_-| /\_/\ | |
| -_-_-_-_-_-_-~|__( ^ .^) + + | |
| _-_-_-_-_-_-_-"" "" | |
| + o o + o | |
| + + | |
| o o _-_-_-_- NSC QA Full Dataset - WangchanBERTa Step 2 | |
| o + | |
| + + o o + | |
| $ srun -v --gres=gpu:1 --pty python nsc_private-baseline-v1.py | |
| """ | |
| print('----- Starting script -----') | |
| #@title Param | |
| param_training_name = "nsc_private-wc-qa-full-step2-v1" #@param {type:"string"} | |
| param_step1_model_name = "nsc_private-wc-qa-full-step1-v1" | |
| param_description = "baseline-v1:NSC-private" #@param {type:"string"} | |
| param_batch_size = 12#@param {type:"integer"} | |
| param_max_length = 416#@param {type:"integer"} | |
| param_doc_stride = 128#@param {type:"integer"} | |
| #@markdown ----- | |
| #@markdown Pretraining Parameters | |
| param_pretrain_lr = 5e-6#@param {type:"number"} | |
| param_pretrain_epoch = 25#@param {type:"integer"} | |
| param_weight_decay = 0.01#@param {type:"number"} | |
| #@markdown ----- | |
| #@markdown Wandb | |
| param_wandb_project = "thaiqa-semi-v10" #@param {type:"string"} | |
| param_tags = ['baseline', 'nsc_span'] #@param {type:"raw"} | |
| param_wandb_api_key = "xxxxxxxxxxxxx" #@param {type:"string"} | |
| #@markdown ----- | |
| #@markdown Colab | |
| param_notebook_path = "/data/users/ppuri/thesis/thaiqa-semi/finetune/semi-v10/" #@param {type:"string"} | |
| import transformers | |
| import numpy as np | |
| from tqdm.auto import tqdm | |
| import torch | |
| #datasets | |
| from datasets import load_dataset | |
| #transformers | |
| from transformers import ( | |
| CamembertTokenizerFast, | |
| TrainingArguments, | |
| Trainer, | |
| ) | |
| #thai2transformers | |
| import thai2transformers | |
| from thai2transformers.preprocess import process_transformers | |
| from thai2transformers.metrics import ( | |
| classification_metrics, | |
| multilabel_classification_metrics, | |
| ) | |
| from thai2transformers.tokenizers import ( | |
| ThaiRobertaTokenizer, | |
| ThaiWordsNewmmTokenizer, | |
| ThaiWordsSyllableTokenizer, | |
| FakeSefrCutTokenizer, | |
| SEFR_SPLIT_TOKEN | |
| ) | |
| import os | |
| import wandb | |
| from datasets import load_dataset, load_metric, Dataset, DatasetDict | |
| import functools | |
| import random | |
| random.seed(5555) | |
| """ | |
| * Wamdb Configuration | |
| """ | |
| print('Configuration Wandb...') | |
| os.environ['WANDB_PROJECT'] = param_wandb_project | |
| os.environ["WANDB_API_KEY"] = param_wandb_api_key | |
| wandb.init(project=param_wandb_project, | |
| name=param_training_name, | |
| tags=param_tags, | |
| group='wangchanberta') | |
| param_config = { | |
| 'batchsize' : param_batch_size, | |
| 'max_length' : param_max_length, | |
| 'doc_stride' : param_doc_stride, | |
| 'learning_rate' : param_pretrain_lr, | |
| 'epoch' : param_pretrain_epoch, | |
| 'weight_decay' : param_weight_decay, | |
| } | |
| wandb.config.update(param_config) | |
| wandb.log({'run_name': param_training_name, 'description': param_description}) | |
| wandb.log({ | |
| 'params' : param_config | |
| }) | |
| batch_size = param_batch_size | |
| tokenizer = CamembertTokenizerFast.from_pretrained('airesearch/wangchanberta-base-att-spm-uncased', revision='main', model_max_length=416) | |
| import json | |
| print('Strat import dataset...') | |
| base_datasets = DatasetDict.load_from_disk('/data/users/ppuri/thesis/thaiqa-semi/data/content/nsc_private/') | |
| # all_new_dataset_list = json.loads(open('/data/users/ppuri/thesis/thaiqa-semi/finetune/semi-v10/nsc-t5_l-question-gen-v1/gen_question-rev1.json', 'r').read()) | |
| # print(len(all_new_dataset_list)) | |
| # selected_id_list = json.loads(open('/data/users/ppuri/thesis/thaiqa-semi/finetune/semi-v10/nsc-baseline-v1/f1_100_id.csv', 'r').read()) | |
| # print(len(selected_id_list)) | |
| # new_dataset_list = [ _ for _ in all_new_dataset_list if _['question_id'] in selected_id_list ] | |
| # print(len(new_dataset_list)) | |
| # new_context_list = [ _['context'] for _ in new_dataset_list ] | |
| # new_question_id_list = [ _['question_id'] for _ in new_dataset_list ] | |
| # new_question_list = [ _['question'] for _ in new_dataset_list ] | |
| # new_article_id_list = [ _['article_id'] for _ in new_dataset_list ] | |
| # new_answers_list = [ _['answers'] for _ in new_dataset_list ] | |
| # document_dict = Dataset.from_dict({ | |
| # 'context' : new_context_list, | |
| # 'question_id' : new_question_id_list, | |
| # 'question' : new_question_list, | |
| # 'article_id' : new_article_id_list, | |
| # 'answers' : new_answers_list | |
| # }) | |
| train_datasets = DatasetDict({ | |
| 'train' : base_datasets['train'], | |
| 'validation' : base_datasets['validation'], | |
| 'test' : base_datasets['test'], | |
| }) | |
| print(train_datasets) | |
| """ | |
| * Preprocessing | |
| """ | |
| print('Strat preprocessing...') | |
| import pythainlp | |
| def preprocessing_normalization(example) : | |
| example['question'] = pythainlp.util.normalize(example['question']) | |
| example['context'] = pythainlp.util.normalize(example['context']) | |
| return example | |
| def lowercase_example(example): | |
| example['question'] = example['question'].lower() | |
| example['context'] = example['context'].lower() | |
| return example | |
| def preprocessing_NSC(example) : | |
| example['question'] = example['question'].replace('\xa0', ' ') | |
| example['context'] = example['context'].replace('\xa0', ' ') | |
| example['answers']['answer'][0] = example['answers']['answer'][0].replace('\xa0', ' ') | |
| return example | |
| def preprocessing_answer(example) : | |
| temp = example | |
| example['answers']['answer'] = [ temp['answers']['answer'] ] | |
| example['answers']['answer_begin_position'] = [ temp['answers']['answer_begin_position'] ] | |
| return example | |
| # train_datasets['train'] = train_datasets['train'].map(preprocessing_answer) | |
| train_datasets = train_datasets.filter(lambda _: _['context'] != None and _['question'] != None and _['answers']['answer'] != None) | |
| train_datasets = train_datasets.map(lowercase_example) | |
| train_datasets = train_datasets.map(preprocessing_normalization) | |
| train_datasets = train_datasets.map(preprocessing_NSC) | |
| max_length = param_max_length | |
| doc_stride = param_doc_stride | |
| pad_on_right = tokenizer.padding_side == "right" | |
| def prepare_train_features(examples): | |
| # Tokenize our examples with truncation and padding, but keep the overflows using a stride. This results | |
| # in one example possible giving several features when a context is long, each of those features having a | |
| # context that overlaps a bit the context of the previous feature. | |
| tokenized_examples = tokenizer( | |
| examples["question" if pad_on_right else "context"], | |
| examples["context" if pad_on_right else "question"], | |
| truncation="only_second" if pad_on_right else "only_first", | |
| max_length=max_length, | |
| stride=doc_stride, | |
| return_overflowing_tokens=True, | |
| return_offsets_mapping=True, | |
| padding="max_length", | |
| ) | |
| # Since one example might give us several features if it has a long context, we need a map from a feature to | |
| # its corresponding example. This key gives us just that. | |
| sample_mapping = tokenized_examples.pop("overflow_to_sample_mapping") | |
| # The offset mappings will give us a map from token to character position in the original context. This will | |
| # help us compute the start_positions and end_positions. | |
| offset_mapping = tokenized_examples.pop("offset_mapping") | |
| # Let's label those examples! | |
| tokenized_examples["start_positions"] = [] | |
| tokenized_examples["end_positions"] = [] | |
| for i, offsets in enumerate(offset_mapping): | |
| # We will label impossible answers with the index of the <s> token. | |
| input_ids = tokenized_examples["input_ids"][i] | |
| cls_index = input_ids.index(tokenizer.cls_token_id) | |
| # Grab the sequence corresponding to that example (to know what is the context and what is the question). | |
| sequence_ids = tokenized_examples.sequence_ids(i) | |
| # One example can give several spans, this is the index of the example containing this span of text. | |
| sample_index = sample_mapping[i] | |
| answers = examples["answers"][sample_index] | |
| # If no answers are given, set the cls_index as answer. | |
| if len(answers["answer_begin_position"]) == 0: | |
| tokenized_examples["start_positions"].append(cls_index) | |
| tokenized_examples["end_positions"].append(cls_index) | |
| else: | |
| # Start/end character index of the answer in the text. | |
| start_char = answers["answer_begin_position"][0] | |
| end_char = start_char + len(answers["answer"][0]) + 1 | |
| # Start token index of the current span in the text. | |
| token_start_index = 0 | |
| while sequence_ids[token_start_index] != (1 if pad_on_right else 0): | |
| token_start_index += 1 | |
| # End token index of the current span in the text. | |
| token_end_index = len(input_ids) - 1 | |
| while sequence_ids[token_end_index] != (1 if pad_on_right else 0): | |
| token_end_index -= 1 | |
| # Detect if the answer is out of the span (in which case this feature is labeled with the CLS index). | |
| if not (offsets[token_start_index][0] <= start_char and offsets[token_end_index][1] >= end_char): | |
| tokenized_examples["start_positions"].append(cls_index) | |
| tokenized_examples["end_positions"].append(cls_index) | |
| else: | |
| # Otherwise move the token_start_index and token_end_index to the two ends of the answer. | |
| # Note: we could go after the last offset if the answer is the last word (edge case). | |
| while token_start_index < len(offsets) and offsets[token_start_index][0] <= start_char: | |
| token_start_index += 1 | |
| tokenized_examples["start_positions"].append(token_start_index - 1) | |
| while offsets[token_end_index][1] >= end_char: | |
| token_end_index -= 1 | |
| tokenized_examples["end_positions"].append(token_end_index + 1) | |
| return tokenized_examples | |
| train_tokenized_datasets = train_datasets.map(prepare_train_features, batched=True, remove_columns=train_datasets["train"].column_names) | |
| train_tokenized_datasets = train_tokenized_datasets.filter(lambda _: _['start_positions'] != 0 and _['end_positions'] != 0) | |
| """ | |
| * Define model | |
| """ | |
| print('Defind model...') | |
| from transformers import AutoModelForQuestionAnswering, TrainingArguments, Trainer | |
| model = AutoModelForQuestionAnswering.from_pretrained(f'{param_notebook_path}{param_step1_model_name}/trained_model') | |
| args = TrainingArguments( | |
| param_training_name, | |
| evaluation_strategy = "epoch", | |
| save_strategy = 'epoch', | |
| learning_rate = param_pretrain_lr, | |
| per_device_train_batch_size = batch_size, | |
| per_device_eval_batch_size = batch_size, | |
| num_train_epochs = param_pretrain_epoch, | |
| weight_decay = param_weight_decay, | |
| report_to = 'wandb', | |
| run_name = param_training_name, | |
| logging_dir=f'{param_notebook_path}{param_training_name}/logs', | |
| logging_strategy='epoch', | |
| ) | |
| from transformers import default_data_collator | |
| data_collator = default_data_collator | |
| trainer = Trainer( | |
| model, | |
| args, | |
| train_dataset=train_tokenized_datasets["train"], | |
| eval_dataset=train_tokenized_datasets["validation"], | |
| data_collator=data_collator, | |
| tokenizer=tokenizer, | |
| ) | |
| """ | |
| * Start Training | |
| """ | |
| print('Starting training...') | |
| trainer.train() | |
| """ | |
| * Save Model | |
| """ | |
| trainer.save_model(f"{param_notebook_path}{param_training_name}/trained_model") | |
| trainer.save_state() | |
| # os.mkdir(f"{param_notebook_path}{param_training_name}/train_steps") | |
| # os.system(f'mv -r {param_training_name}/ {param_notebook_path}{param_training_name}/pretrain_steps/') | |
| training_states = json.loads(open(f"{param_notebook_path}{param_training_name}/trainer_state.json", 'r').read()) | |
| all_training_states = [ _ for _ in training_states['log_history'] if _.get('eval_loss') != None ] | |
| best_state = sorted(all_training_states, key=lambda k: k['eval_loss'])[0] | |
| """ | |
| * Evaluation on Last Epoch | |
| """ | |
| n_best_size = 20 | |
| max_answer_length = 30 | |
| def prepare_validation_features(examples): | |
| # Tokenize our examples with truncation and maybe padding, but keep the overflows using a stride. This results | |
| # in one example possible giving several features when a context is long, each of those features having a | |
| # context that overlaps a bit the context of the previous feature. | |
| tokenized_examples = tokenizer( | |
| examples["question" if pad_on_right else "context"], | |
| examples["context" if pad_on_right else "question"], | |
| truncation="only_second" if pad_on_right else "only_first", | |
| max_length=max_length, | |
| stride=doc_stride, | |
| return_overflowing_tokens=True, | |
| return_offsets_mapping=True, | |
| padding="max_length", | |
| ) | |
| # Since one example might give us several features if it has a long context, we need a map from a feature to | |
| # its corresponding example. This key gives us just that. | |
| sample_mapping = tokenized_examples.pop("overflow_to_sample_mapping") | |
| # We keep the example_id that gave us this feature and we will store the offset mappings. | |
| tokenized_examples["example_id"] = [] | |
| for i in range(len(tokenized_examples["input_ids"])): | |
| # Grab the sequence corresponding to that example (to know what is the context and what is the question). | |
| sequence_ids = tokenized_examples.sequence_ids(i) | |
| context_index = 1 if pad_on_right else 0 | |
| # One example can give several spans, this is the index of the example containing this span of text. | |
| sample_index = sample_mapping[i] | |
| tokenized_examples["example_id"].append(examples["question_id"][sample_index]) | |
| # Set to None the offset_mapping that are not part of the context so it's easy to determine if a token | |
| # position is part of the context or not. | |
| tokenized_examples["offset_mapping"][i] = [ | |
| (o if sequence_ids[k] == context_index else None) | |
| for k, o in enumerate(tokenized_examples["offset_mapping"][i]) | |
| ] | |
| return tokenized_examples | |
| validation_features = train_datasets["test"].map( | |
| prepare_validation_features, | |
| batched=True, | |
| remove_columns=train_datasets["test"].column_names | |
| ) | |
| raw_predictions = trainer.predict(validation_features) | |
| validation_features.set_format(type=validation_features.format["type"], columns=list(validation_features.features.keys())) | |
| import collections | |
| examples = train_datasets["test"] | |
| features = validation_features | |
| example_id_to_index = {k: i for i, k in enumerate(examples["question_id"])} | |
| features_per_example = collections.defaultdict(list) | |
| for i, feature in enumerate(features): | |
| features_per_example[example_id_to_index[feature["example_id"]]].append(i) | |
| from tqdm.auto import tqdm | |
| def postprocess_qa_predictions(examples, features, raw_predictions, n_best_size = 20, max_answer_length = 30): | |
| all_start_logits, all_end_logits = raw_predictions | |
| # Build a map example to its corresponding features. | |
| example_id_to_index = {k: i for i, k in enumerate(examples["question_id"])} | |
| features_per_example = collections.defaultdict(list) | |
| for i, feature in enumerate(features): | |
| features_per_example[example_id_to_index[feature["example_id"]]].append(i) | |
| # The dictionaries we have to fill. | |
| predictions = collections.OrderedDict() | |
| # Logging. | |
| print(f"Post-processing {len(examples)} example predictions split into {len(features)} features.") | |
| # Let's loop over all the examples! | |
| for example_index, example in enumerate(tqdm(examples)): | |
| # Those are the indices of the features associated to the current example. | |
| feature_indices = features_per_example[example_index] | |
| min_null_score = None # Only used if squad_v2 is True. | |
| valid_answers = [] | |
| context = example["context"] | |
| # Looping through all the features associated to the current example. | |
| for feature_index in feature_indices: | |
| # We grab the predictions of the model for this feature. | |
| start_logits = all_start_logits[feature_index] | |
| end_logits = all_end_logits[feature_index] | |
| # This is what will allow us to map some the positions in our logits to span of texts in the original | |
| # context. | |
| offset_mapping = features[feature_index]["offset_mapping"] | |
| # Update minimum null prediction. | |
| cls_index = features[feature_index]["input_ids"].index(tokenizer.cls_token_id) | |
| feature_null_score = start_logits[cls_index] + end_logits[cls_index] | |
| if min_null_score is None or min_null_score < feature_null_score: | |
| min_null_score = feature_null_score | |
| # Go through all possibilities for the `n_best_size` greater start and end logits. | |
| start_indexes = np.argsort(start_logits)[-1 : -n_best_size - 1 : -1].tolist() | |
| end_indexes = np.argsort(end_logits)[-1 : -n_best_size - 1 : -1].tolist() | |
| for start_index in start_indexes: | |
| for end_index in end_indexes: | |
| # Don't consider out-of-scope answers, either because the indices are out of bounds or correspond | |
| # to part of the input_ids that are not in the context. | |
| if ( | |
| start_index >= len(offset_mapping) | |
| or end_index >= len(offset_mapping) | |
| or offset_mapping[start_index] is None | |
| or offset_mapping[end_index] is None | |
| ): | |
| continue | |
| # Don't consider answers with a length that is either < 0 or > max_answer_length. | |
| if end_index < start_index or end_index - start_index + 1 > max_answer_length: | |
| continue | |
| start_char = offset_mapping[start_index][0] | |
| end_char = offset_mapping[end_index][1] | |
| valid_answers.append( | |
| { | |
| "score": start_logits[start_index] + end_logits[end_index], | |
| "text": context[start_char: end_char] | |
| } | |
| ) | |
| if len(valid_answers) > 0: | |
| best_answer = sorted(valid_answers, key=lambda x: x["score"], reverse=True)[0] | |
| else: | |
| # In the very rare edge case we have not a single non-null prediction, we create a fake prediction to avoid | |
| # failure. | |
| best_answer = {"text": "", "score": 0.0} | |
| # Let's pick our final answer: the best one or the null answer (only for squad_v2) | |
| answer = best_answer["text"] if best_answer["score"] > min_null_score else "" | |
| predictions[example["question_id"]] = answer | |
| return predictions | |
| final_predictions = postprocess_qa_predictions(train_datasets["test"], validation_features, raw_predictions.predictions) | |
| thai_metric = load_metric('/data/users/ppuri/thesis/thaiqa_squad_metric/thai_squad_newmm.py') | |
| test_result = {} | |
| import re | |
| pattern = re.compile(r"[^.\u0E00-\u0E7F0-9a-zA-Z' ]|^'|'$|''") | |
| final_predictions_test_2 = [ (_[0], re.sub(pattern, '', _[1]).strip()) for _ in list(final_predictions.items()) ] | |
| formatted_predictions = [{"id": str(k), "prediction_text": v} for k, v in final_predictions.items()] | |
| references = [{"id": str(ex["question_id"]), | |
| "answers": {'text': ex['answers']['answer'], | |
| 'answer_start':ex['answers']['answer_begin_position']}} for ex in train_datasets["test"]] | |
| e = thai_metric.compute(predictions=formatted_predictions, references=references) | |
| formatted_predictions = [{"id": str(k), "prediction_text": v} for k, v in final_predictions_test_2] | |
| references = [{"id": str(ex["question_id"]), | |
| "answers": {'text': ex['answers']['answer'], | |
| 'answer_start':ex['answers']['answer_begin_position']}} for ex in train_datasets["test"]] | |
| e2 = thai_metric.compute(predictions=formatted_predictions, references=references) | |
| test_result['last_epoch'] = { | |
| 'wo_post' : e, | |
| 'w_post' : e2 | |
| } | |
| """ | |
| * Evaluate on Best Epoch | |
| """ | |
| best_model_path = f'{param_notebook_path}{param_training_name}/checkpoint-%s/'%(best_state['step']) | |
| model = AutoModelForQuestionAnswering.from_pretrained(best_model_path) | |
| args = TrainingArguments( | |
| param_training_name, | |
| evaluation_strategy = "epoch", | |
| save_strategy = 'epoch', | |
| learning_rate = param_pretrain_lr, | |
| per_device_train_batch_size = batch_size, | |
| per_device_eval_batch_size = batch_size, | |
| num_train_epochs = param_pretrain_epoch, | |
| weight_decay = param_weight_decay, | |
| report_to = 'wandb', | |
| run_name = param_training_name, | |
| ) | |
| data_collator = default_data_collator | |
| trainer = Trainer( | |
| model, | |
| args, | |
| train_dataset=train_tokenized_datasets["train"], | |
| eval_dataset=train_tokenized_datasets["validation"], | |
| data_collator=data_collator, | |
| tokenizer=tokenizer, | |
| ) | |
| raw_predictions = trainer.predict(validation_features) | |
| final_predictions = postprocess_qa_predictions(train_datasets["test"], validation_features, raw_predictions.predictions) | |
| final_predictions_test_2 = [ (_[0], re.sub(pattern, '', _[1]).strip()) for _ in list(final_predictions.items()) ] | |
| formatted_predictions = [{"id": str(k), "prediction_text": v} for k, v in final_predictions.items()] | |
| references = [{"id": str(ex["question_id"]), | |
| "answers": {'text': ex['answers']['answer'], | |
| 'answer_start':ex['answers']['answer_begin_position']}} for ex in train_datasets["test"]] | |
| e = thai_metric.compute(predictions=formatted_predictions, references=references) | |
| formatted_predictions = [{"id": str(k), "prediction_text": v} for k, v in final_predictions_test_2] | |
| references = [{"id": str(ex["question_id"]), | |
| "answers": {'text': ex['answers']['answer'], | |
| 'answer_start':ex['answers']['answer_begin_position']}} for ex in train_datasets["test"]] | |
| e2 = thai_metric.compute(predictions=formatted_predictions, references=references) | |
| test_result['best_epoch'] = { | |
| 'wo_post' : e, | |
| 'w_post' : e2, | |
| 'best_state_path' : best_model_path, | |
| 'best_state_detail' : best_state | |
| } | |
| print(test_result) | |
| open(f'{param_notebook_path}{param_training_name}/test_result.json', 'w').write(json.dumps(test_result)) | |
| if not os.path.exists(f'/data/users/ppuri/thesis/thaiqa-semi/result/{param_wandb_project}/{param_training_name}/') : | |
| os.mkdir(f'/data/users/ppuri/thesis/thaiqa-semi/result/{param_wandb_project}/{param_training_name}') | |
| open(f'/data/users/ppuri/thesis/thaiqa-semi/result/{param_wandb_project}/{param_training_name}/test_result.json', 'w').write(json.dumps(test_result)) |
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