brew install proj
brew install geos
brew install gdal
Shane Hogle slhogle
djhocking
/ dplyr-select-names.R
Last active
February 28, 2022 19:08
Select columns by vector of names using dplyr
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| one <- seq(1:10) | |
| two <- rnorm(10) | |
| three <- runif(10, 1, 2) | |
| four <- -10:-1 | |
| df <- data.frame(one, two, three) | |
| df2 <- data.frame(one, two, three, four) | |
| str(df) |
This is complete taken from Ryan D on biostar: http://www.biostars.org/p/2909/#16419
It takes a region in a format like "chr2:1234-3456". If an rs number is specified after the region, it will output the R^2 for every SNP in that region with the requested SNP; otherwise, it is all-vs-all.
gourneau
/ downloadChunks.py
Created
December 4, 2011 18:33
Download large files with Python urllib2 to a temp directory
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| import os | |
| import urllib2 | |
| import math | |
| def downloadChunks(url): | |
| """Helper to download large files | |
| the only arg is a url | |
| this file will go to a temp directory | |
| the file will also be downloaded | |
| in chunks and print out how much remains |