Chris kjczarne

Meshlab

Meshlab -> an open-source tool which lets you work with 3D meshes and models

[!danger] Deep sigh. As far as I'm aware, there is no way to undo in Meshlab, which means you should never overwrite your original files if you want to prevent information loss. Also whenever you can use the preview option in all filters and transforms before you hit Apply.

![[meshlab-interface.png]]

Installation

Reproduced from the scGPT Cell Annotation tutorial. I just needed this consolidated into one file and saved as a gist. The code is an exact copy from the tutorial and the only modifications are in the paths to suit my setup.

To fine-tune scGPT for the Cell Annotation task, run the code snippet below. You can run it in VSCode with the notebook mode on, or directly from the command line.

Before you run:

Put the MS dataset under data/ms
Put the pre-trained model weights under save/scGPT_human

FParsec Debugging and Testing Tools

Testing

Test parser and print parsing result to STDOUT:

let testPrint p str =
    printfn "Input: %s" str
    match run p str with

	{
	// Place your snippets for toml here. Each snippet is defined under a snippet name and has a prefix, body and
	// description. The prefix is what is used to trigger the snippet and the body will be expanded and inserted. Possible variables are:
	// $1, $2 for tab stops, $0 for the final cursor position, and ${1:label}, ${2:another} for placeholders. Placeholders with the
	// same ids are connected.
	// Example:
	// "Print to console": {
	// "prefix": "log",
	// "body": [
	// "console.log('$1');",

	import json, requests, argparse, os, warnings, sys, pprint


	class DefaultParser(argparse.ArgumentParser):

	def error(self, message):
	sys.stderr.write(f'error: {message}\n')
	self.print_help()
	sys.exit(2)