The run_prs.py script slack_utils.py was created to generate polygenic risk scores (PRS) in the UK Biobank (UKB) using Hail 0.2. Currently, I have hard-coded the file locations in-line with my own file structure and that of the Neale Lab UKB Round 2 GWAS.
NOTE: This is under active development and generally intended for my own use and the use of my collaborators. ADAPT AT YOUR OWN PERIL!!
- This script assumes that you have generated an input file using my process-sumstats and LDPred repos.