Chanaka Mannapperuma irusri

awk 'NR==1{n=split($0,c);next} {for(i=1;i<=n;i++)s[++t]=$1 FS c[i] FS $(i+1)} END{for(i=1;i<=t;i++){print s[i]}} ' file

input

-1	1	-2	2	-3	apical(-4+-5)	0
Potra2c131s34674	0.104987	0	0	0	0	0	0
Potra2c131s34675	1.53804	1.23118	0	4.14176	0.722722	0.81614	4.01801
Potra2c131s34685	22.256	68.5207	25.7406	109.441	18.7148	21.8992	36.6248

Creating Phylogenetic trees

Here are the steps that we used to create the Phylogenetic tree for ortholog genes descibed in the paper.

1.) We have to extract the protein sequences from Phytozome genome portal.

2.) We made BLAST indices using the following command for Eucalyptus grandis v2.0, Malus domestica v1.0, Salix purpurea v1.0, Theobroma cacao v2.1, Citrus sinensis v1.1, Prunus persica v1.0 and Betula pendula v1.0 sequences.

####

Fix logrotate error regarding mysql on Ubuntu

Sometimes if you are mailed of cronjobs, will may got an error like this:

/etc/cron.daily/logrotate:
error: error running shared postrotate script for '/var/log/mysql.log /var/log/mysql/mysql.log /var/log/mysql/mysql-slow.log /var/log/mysql/error.log '
run-parts: /etc/cron.daily/logrotate exited with return code 1

Well, don't panic! Also don't ignore it! :)

	<?php
	// GET '$rss_feed_url' using URL param['q']
	$rss_feed_url = $_GET['q'];

	// Load the RSS feed
	$tmpRSS = simplexml_load_file($rss_feed_url);

	// Get today's date in the format used by pubDate in the RSS feed
	$today_date = date('D, d M Y');

	{
	"data": {
	"nodes": {
	"0": {
	"count": 1,
	"distance": 0,
	"objects": [
	"Potra2n10c20318"
	],
	"features": [

	╔══════════════════╦══════════╦═════════════╗
	║ ║ Dipped ║ Main beam ║
	╠══════════════════╬══════════╬═════════════╣
	║ Dark clothes ║ 20-30 m ║ 150 m ║
	║ Bright clothes ║ 60 m ║ 300 m ║
	║ With Reflectors ║ 125 m ║ 400 - 450 m ║
	╚══════════════════╩══════════╩═════════════╝


	SET NAMES utf8;
	SET FOREIGN_KEY_CHECKS = 0;

	-- ----------------------------
	-- Table structure for `annotation`
	-- ----------------------------
	DROP TABLE IF EXISTS `annotation`;
	CREATE TABLE `annotation` (
	`gene_id` varchar(50) NOT NULL,

	/*
	Proposed database design for PlantGenIE
	*/

	SET NAMES utf8;
	SET FOREIGN_KEY_CHECKS = 0;

	-- ----------------------------
	-- Table structure for `expression`
	-- ----------------------------

	version: '3.1'
	services:
	geniesys:
	image: "irusri/docker4geniesys:latest"
	ports:
	- "80:80"
	- "3002:3006"
	environment:
	- "MYSQL_ADMIN_PASS=mypass"
	volumes:

	// Originally found at: http://rangevoting.org/Qnorm.html

	/** * @(#)qnorm.js * * Copyright (c) 2000 by Sundar Dorai-Raj
	* * @author Sundar Dorai-Raj
	* * Email: sdoraira@vt.edu
	* * This program is free software; you can redistribute it and/or
	* * modify it under the terms of the GNU General Public License
	* * as published by the Free Software Foundation; either version 2
	* * of the License, or (at your option) any later version,
	* * provided that any use properly credits the author.