-
-
Save georgedevasia/22354a7011f158e07aedf4e91a68aa05 to your computer and use it in GitHub Desktop.
Git Repository
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Create git repository and push to remote | |
| cd workspace/Clinical_genomics_framework/ | |
| git init | |
| git add . | |
| git commit -m "Clinical genomics framework" | |
| echo "# Clinical_genomics_framework" >> README.md | |
| git add README.md | |
| git commit -m "Readme file" | |
| Create a repo online using browser then push local to remote | |
| git remote add origin https://github.com/nilesh-tawari/Clinical_genomics_framework.git | |
| git push -u origin master | |
| RESOURCE: https://stackoverflow.com/questions/37937984/git-refusing-to-merge-unrelated-histories | |
| # configure git repo | |
| git config user.name "nilesh-tawari" | |
| git config user.email "EMAIL" | |
| # clean the history | |
| git clone --mirror https://github.com/nilesh-tawari/fusion_list.git | |
| cd fusion_list.git/ | |
| java -jar ../../bfg-1.13.0.jar --delete-files CosmicBreakpointsExport.tsv.gz | |
| java -jar ../../bfg-1.13.0.jar --delete-files CosmicFusionExport.tsv.gz | |
| git reflog expire --expire=now --all && git gc --prune=now --aggressive | |
| git push | |
| # sync fork with master REF: https://help.github.com/articles/syncing-a-fork/ | |
| git remote -v | |
| git remote add upstream https://github.com/macarthur-lab/clinvar.git | |
| git remote -v | |
| git fetch upstream | |
| git checkout master | |
| git merge upstream/master | |
| git status | |
| git add . | |
| git commit -m "check snsps" | |
| git push origin master | |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment