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djvanderlaan/Vagrantfile

Created January 17, 2015 18:56
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  1. Jan van der Laan created this gist Jan 17, 2015.
    16 changes: 16 additions & 0 deletions Vagrantfile
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    # -*- mode: ruby -*-
    # vi: set ft=ruby :

    VAGRANTFILE_API_VERSION = "2"

    Vagrant.configure(VAGRANTFILE_API_VERSION) do |config|
    config.vm.box = "ubuntu-14.04"

    config.vm.box_url = "http://cloud-images.ubuntu.com/vagrant/trusty/current/trusty-server-cloudimg-amd64-vagrant-disk1.box"

    config.vm.provider "virtualbox" do |vb|
    vb.customize ["modifyvm", :id, "--memory", "1024"]
    end
    config.vm.provision :shell, :path => "bootstrap.sh"
    config.vm.network :forwarded_port, host: 4567, guest: 80
    end
    64 changes: 64 additions & 0 deletions bootstrap.sh
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    #!/usr/bin/env bash

    apt-get update

    # Install packages needed to build R
    apt-get install -y vim g++ gfortran make libreadline-dev
    apt-get install -y clang-3.4 lldb-3.4 llvm-3.4-runtime

    # ====== Set locale ======

    # The image doesn't set LC_TIME, LC_NUMERIC etc, which causes warnings when
    # starting R
    echo "LC_ALL=\"en_US.UTF-8\"" >> /etc/default/locale

    # ====== Install TeXLive ======
    # This will result in a more compact install than installing the needed Ubuntu
    # packages which results in >1GB download.

    cd /tmp

    # Download and extract texlive
    wget http://mirror.ctan.org/systems/texlive/tlnet/install-tl-unx.tar.gz
    tar -xzf install-tl-unx.tar.gz

    # Run installer; install basic scheme
    pattern="install-tl"
    for _dir in *"${pattern}"*; do
    [ -d "${_dir}" ] && dir="${_dir}" && break
    done
    cd "${dir}"

    echo "selected_scheme scheme-basic" > texlive.profile
    ./install-tl -profile texlive.profile

    # Add texlive to the path
    export PATH=/usr/local/texlive/2014/bin/x86_64-linux:$PATH
    echo "export PATH=\$PATH:/usr/local/texlive/2014/bin/x86_64-linux" > /etc/profile.d/texlive.sh
    chmod +x /etc/profile.d/texlive.sh

    # Install some additional packages needed to build packages
    tlmgr install inconsolata upquote times helvetic ec courier fancyvrb


    # ====== Build and install R ======

    cd /tmp

    # Download the R source
    wget http://cran.rstudio.com/src/base/R-3/R-3.1.2.tar.gz
    tar -xzf R-3.1.2.tar.gz

    cd R-3.1.2

    # Create a config.site; this sets up clang as the compiler for R
    echo "#! /bin/sh" > config.site
    echo "CC=\"clang -std=gnu99 -fsanitize=undefined\"" >> config.site
    echo "CFLAGS=\"-fno-omit-frame-pointer -O2 -Wall -pedantic -mtune=native\"" >> config.site
    echo "CXX=\"clang++ -fsanitize=undefined -fno-sanitize=function -fno-omit-frame-pointer\"" >> config.site

    # Configure and build R
    ./configure --with-x=no
    make
    make install