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Bedtools Cheatsheet

General:

Tools	Description
flank	Create new intervals from the flanks of existing intervals.
slop	Adjust the size of intervals.
shift	Adjust the position of intervals.
subtract	Remove intervals based on overlaps b/w two files.

	#!/bin/bash

	# These variables can be overwritten using the arguments below
	VERSION="1.1.463"
	# drwho is listed as user in YARN's Resource Manager UI.
	USER="drwho"
	# Depending on where the EMR cluster lives, you might have to change this to avoid security issues.
	# To change the default password (and user), use the arguments bellow.
	# If the cluster is not visible on the Internet, you can just leave the defaults for convenience.
	PASS="tardis"

	library(httr)
	library(digest)
	library(XML)

	s3_request <- function(verb, bucket, path = "/", query = NULL,
	content = NULL, date = NULL) {
	list(
	verb = verb,
	bucket = bucket,
	path = path,