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April 30, 2026 20:38
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(partial) EasyBuild log for failed build of /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA/ResistanceGA-4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2.eb (easyblock PR(s) #4102)
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| == 2026-04-30 22:38:29,725 easyblock.py:382 INFO This is EasyBuild 5.3.1.dev0-r632d4d24ca91f19077aaa52c52020791d82596a3 (framework: 5.3.1.dev0-r632d4d24ca91f19077aaa52c52020791d82596a3, easyblocks: 5.3.1.dev0-r71b010288084e1777fbdd0e3db319f0104134b1d) on host i7003. | |
| == 2026-04-30 22:38:29,726 easyblock.py:388 INFO This is easyblock Bundle from module easybuild.easyblocks.generic.bundle (/home/s3248973/.local/EasyBuildDev/easybuild-easyblocks/easybuild/easyblocks/generic/bundle.py) | |
| == 2026-04-30 22:38:29,726 easyblock.py:1234 INFO Build dir set to /dev/shm/s3248973-EasyBuild/ResistanceGA/4.2-5/foss-2022a-R-4.2.1-Julia-1.9.2 | |
| == 2026-04-30 22:38:29,726 easyblock.py:1297 INFO Software install dir set to /data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2 | |
| == 2026-04-30 22:38:29,726 easyblock.py:1302 INFO Module install dir set to /data/horse/ws/s3248973-EasyBuild/easybuild-rome/modules/all | |
| == 2026-04-30 22:38:29,727 easyblock.py:356 INFO Init completed for application name ResistanceGA version 4.2-5 | |
| == 2026-04-30 22:38:29,727 easyconfig.py:670 INFO Creating new EasyConfig instance for /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA/ResistanceGA-4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2.eb while copying | |
| == 2026-04-30 22:38:29,728 easyconfig.py:485 INFO Performing quick parse to check for valid easyconfig file... | |
| == 2026-04-30 22:38:29,729 environment.py:95 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') | |
| == 2026-04-30 22:38:29,729 environment.py:95 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') | |
| == 2026-04-30 22:38:29,730 environment.py:95 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') | |
| == 2026-04-30 22:38:29,730 environment.py:95 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') | |
| == 2026-04-30 22:38:29,730 environment.py:95 INFO Environment variable LMOD_TERSE_DECORATIONS set to no (previous value: 'no') | |
| == 2026-04-30 22:38:29,730 modules.py:729 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it | |
| == 2026-04-30 22:38:29,731 modules.py:886 INFO Prepended list of module paths with path used by EasyBuild: /data/horse/ws/s3248973-EasyBuild/easybuild-rome/modules/all | |
| == 2026-04-30 22:38:29,731 easyconfig.py:494 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'dataset', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] | |
| == 2026-04-30 22:38:29,732 easyconfig.py:2067 INFO Derived full easyblock module path for Bundle: easybuild.easyblocks.generic.bundle | |
| == 2026-04-30 22:38:29,732 easyconfig.py:2123 INFO Successfully obtained class 'Bundle' for easyblock 'Bundle' (software name 'ResistanceGA') | |
| == 2026-04-30 22:38:29,733 easyconfig.py:768 INFO Parsing easyconfig file None with rawcontent: easyblock = 'Bundle' | |
| name = 'ResistanceGA' | |
| version = '4.2-5' | |
| local_commit = '04326a8' | |
| local_juliaver = '1.9.2' | |
| versionsuffix = '-R-%%(rver)s-Julia-%s' % local_juliaver | |
| homepage = 'https://github.com/wpeterman/ResistanceGA' | |
| description = "An R package to optimize resistance surfaces using Genetic Algorithms." | |
| toolchain = {'name': 'foss', 'version': '2022a'} | |
| dependencies = [ | |
| ('R', '4.2.1'), | |
| ('Julia', local_juliaver, '-linux-%s' % ARCH, SYSTEM), | |
| ('RCall', '0.13.17', versionsuffix), # order matters! RCall must be loaded before Circuitscape (#19281) | |
| ('Circuitscape', '5.12.3', '-Julia-%s' % local_juliaver, SYSTEM), | |
| ('Suppressor', '0.2.4', '-Julia-%s' % local_juliaver, SYSTEM), | |
| ] | |
| exts_defaultclass = 'RPackage' | |
| exts_filter = ("R -q --no-save", "library(%(ext_name)s)") | |
| exts_default_options = { | |
| 'source_urls': [ | |
| 'https://cran.r-project.org/src/contrib/', | |
| 'https://cran.rstudio.com/src/contrib/', | |
| 'https://cran.r-project.org/src/contrib/Archive/%(name)s/', | |
| ], | |
| 'source_tmpl': '%(name)s_%(version)s.tar.gz', | |
| } | |
| exts_list = [ | |
| ('GA', '3.2.2', { | |
| 'checksums': ['6245c634a11b8414bde7ed326b8c615512645489b19969619484c865e900bf8c'], | |
| }), | |
| ('MuMIn', '1.47.1', { | |
| 'checksums': ['1223b5ada6f7d58220ac0267fa3473993190742646cbbb3dfe63895e61621af6'], | |
| }), | |
| ('spdep', '1.2-7', { | |
| 'checksums': ['9dac594825bf2d0aa31e845bfec05d8ce206327840fe455391741dbbdf9c9eea'], | |
| }), | |
| ('JuliaCall', '0.17.5', { | |
| 'patches': ['JuliaCall-0.17.5-top_level_macro.patch'], | |
| 'checksums': [ | |
| {'JuliaCall_0.17.5.tar.gz': '92542f9f02fe43702c18cf6c5a52fcbfc5ef3da6a2f73bfded773f4fc5edd90c'}, | |
| {'JuliaCall-0.17.5-top_level_macro.patch': | |
| '68508176c44fab479bce2a1a4e0302f835bd0d6a980abf860d713bb71f12145a'}, | |
| ], | |
| }), | |
| ('XR', '0.7.2', { | |
| 'checksums': ['7fc35f607d68095f861711fda9acbd8804829ad3915a22a407ab1e9fb89c1949'], | |
| }), | |
| ('XRJulia', '0.9.0', { | |
| 'checksums': ['f59fddbe7ab65562f6e019ca7016417fff81f5b7e5f0ddeb00129aaaa6336f68'], | |
| }), | |
| (name, version, { | |
| 'source_urls': ['https://github.com/wpeterman/ResistanceGA/archive/'], | |
| 'sources': [{'download_filename': '04326a8.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], | |
| 'checksums': ['6791c8b42559c0abe94b7a326961f45af2939905021cb9da7220383bf2ea3d75'], | |
| }), | |
| ] | |
| modextrapaths = { | |
| 'R_LIBS_SITE': '', | |
| } | |
| sanity_check_paths = { | |
| 'files': [], | |
| 'dirs': ['%(name)s'], | |
| } | |
| moduleclass = 'bio' | |
| == 2026-04-30 22:38:29,733 parser.py:197 INFO Type checking of easyconfig parameter values passed! | |
| == 2026-04-30 22:38:29,733 easyconfig.py:748 INFO setting easyconfig parameter dependencies: value [('R', '4.2.1'), ('Julia', '1.9.2', '-linux-x86_64', {'name': 'system', 'version': 'system'}), ('RCall', '0.13.17', '-R-%(rver)s-Julia-1.9.2'), ('Circuitscape', '5.12.3', '-Julia-1.9.2', {'name': 'system', 'version': 'system'}), ('Suppressor', '0.2.4', '-Julia-1.9.2', {'name': 'system', 'version': 'system'})] (type: <class 'list'>) | |
| == 2026-04-30 22:38:29,734 easyconfig.py:748 INFO setting easyconfig parameter description: value An R package to optimize resistance surfaces using Genetic Algorithms. (type: <class 'str'>) | |
| == 2026-04-30 22:38:29,734 easyconfig.py:748 INFO setting easyconfig parameter easyblock: value Bundle (type: <class 'str'>) | |
| == 2026-04-30 22:38:29,734 easyconfig.py:748 INFO setting easyconfig parameter exts_default_options: value {'source_urls': ['https://cran.r-project.org/src/contrib/', 'https://cran.rstudio.com/src/contrib/', 'https://cran.r-project.org/src/contrib/Archive/%(name)s/'], 'source_tmpl': '%(name)s_%(version)s.tar.gz'} (type: <class 'dict'>) | |
| == 2026-04-30 22:38:29,734 easyconfig.py:748 INFO setting easyconfig parameter exts_defaultclass: value RPackage (type: <class 'str'>) | |
| == 2026-04-30 22:38:29,735 easyconfig.py:748 INFO setting easyconfig parameter exts_filter: value ('R -q --no-save', 'library(%(ext_name)s)') (type: <class 'tuple'>) | |
| == 2026-04-30 22:38:29,735 easyconfig.py:748 INFO setting easyconfig parameter exts_list: value [('GA', '3.2.2', {'checksums': ['6245c634a11b8414bde7ed326b8c615512645489b19969619484c865e900bf8c']}), ('MuMIn', '1.47.1', {'checksums': ['1223b5ada6f7d58220ac0267fa3473993190742646cbbb3dfe63895e61621af6']}), ('spdep', '1.2-7', {'checksums': ['9dac594825bf2d0aa31e845bfec05d8ce206327840fe455391741dbbdf9c9eea']}), ('JuliaCall', '0.17.5', {'patches': ['JuliaCall-0.17.5-top_level_macro.patch'], 'checksums': [{'JuliaCall_0.17.5.tar.gz': '92542f9f02fe43702c18cf6c5a52fcbfc5ef3da6a2f73bfded773f4fc5edd90c'}, {'JuliaCall-0.17.5-top_level_macro.patch': '68508176c44fab479bce2a1a4e0302f835bd0d6a980abf860d713bb71f12145a'}]}), ('XR', '0.7.2', {'checksums': ['7fc35f607d68095f861711fda9acbd8804829ad3915a22a407ab1e9fb89c1949']}), ('XRJulia', '0.9.0', {'checksums': ['f59fddbe7ab65562f6e019ca7016417fff81f5b7e5f0ddeb00129aaaa6336f68']}), ('ResistanceGA', '4.2-5', {'source_urls': ['https://github.com/wpeterman/ResistanceGA/archive/'], 'sources': [{'download_filename': '04326a8.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['6791c8b42559c0abe94b7a326961f45af2939905021cb9da7220383bf2ea3d75']})] (type: <class 'list'>) | |
| == 2026-04-30 22:38:29,735 easyconfig.py:748 INFO setting easyconfig parameter homepage: value https://github.com/wpeterman/ResistanceGA (type: <class 'str'>) | |
| == 2026-04-30 22:38:29,735 easyconfig.py:748 INFO setting easyconfig parameter modextrapaths: value {'R_LIBS_SITE': ''} (type: <class 'dict'>) | |
| == 2026-04-30 22:38:29,736 easyconfig.py:748 INFO setting easyconfig parameter moduleclass: value bio (type: <class 'str'>) | |
| == 2026-04-30 22:38:29,736 easyconfig.py:748 INFO setting easyconfig parameter name: value ResistanceGA (type: <class 'str'>) | |
| == 2026-04-30 22:38:29,736 easyconfig.py:748 INFO setting easyconfig parameter sanity_check_paths: value {'files': [], 'dirs': ['%(name)s']} (type: <class 'dict'>) | |
| == 2026-04-30 22:38:29,736 easyconfig.py:748 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: <class 'dict'>) | |
| == 2026-04-30 22:38:29,736 easyconfig.py:748 INFO setting easyconfig parameter version: value 4.2-5 (type: <class 'str'>) | |
| == 2026-04-30 22:38:29,737 easyconfig.py:748 INFO setting easyconfig parameter versionsuffix: value -R-%(rver)s-Julia-1.9.2 (type: <class 'str'>) | |
| == 2026-04-30 22:38:29,737 hooks.py:220 INFO Found parse_hook hook | |
| == 2026-04-30 22:38:29,737 hooks.py:251 INFO Running 'parse_hook' hook function (args: [<easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f36d5329070>], keyword args: {})... | |
| == 2026-04-30 22:38:29,739 easyconfig.py:816 INFO Parsing dependency specifications... | |
| == 2026-04-30 22:38:29,740 easyconfig.py:1830 INFO Generating template values... | |
| == 2026-04-30 22:38:29,740 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2026-04-30 22:38:29,740 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2026-04-30 22:38:29,741 easyconfig.py:1849 INFO Template values: arch='x86_64', bitbucket_account='resistancega', github_account='resistancega', mpi_cmd_prefix='mpirun -n 1', name='ResistanceGA', nameletter='R', nameletterlower='r', namelower='resistancega', rmajver='4', rminver='2', rpath_enabled='false', rshortver='4.2', rver='4.2.1', software_commit='', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='4.2-5', version_major='4', version_major_minor='4.2-5', version_minor='2-5', versionprefix='', versionsuffix='-R-4.2.1-Julia-1.9.2' | |
| == 2026-04-30 22:38:29,741 modules.py:1054 INFO Checking whether R/4.2.1-gompi-2022a exists... | |
| == 2026-04-30 22:38:29,742 modules.py:1075 INFO Module R/4.2.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper | |
| == 2026-04-30 22:38:29,742 modules.py:1082 INFO Result for existence check of R/4.2.1-gompi-2022a module: False | |
| == 2026-04-30 22:38:29,742 modules.py:1054 INFO Checking whether R/4.2.1-gfbf-2022a exists... | |
| == 2026-04-30 22:38:29,743 modules.py:1075 INFO Module R/4.2.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper | |
| == 2026-04-30 22:38:29,743 modules.py:1082 INFO Result for existence check of R/4.2.1-gfbf-2022a module: False | |
| == 2026-04-30 22:38:29,743 modules.py:1054 INFO Checking whether R/4.2.1-GCC-11.3.0 exists... | |
| == 2026-04-30 22:38:29,743 modules.py:1075 INFO Module R/4.2.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper | |
| == 2026-04-30 22:38:29,744 modules.py:1082 INFO Result for existence check of R/4.2.1-GCC-11.3.0 module: False | |
| == 2026-04-30 22:38:29,744 modules.py:1054 INFO Checking whether R/4.2.1-GCCcore-11.3.0 exists... | |
| == 2026-04-30 22:38:29,744 modules.py:1075 INFO Module R/4.2.1-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper | |
| == 2026-04-30 22:38:29,745 modules.py:1082 INFO Result for existence check of R/4.2.1-GCCcore-11.3.0 module: False | |
| == 2026-04-30 22:38:29,745 easyconfig.py:2587 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'R', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} | |
| == 2026-04-30 22:38:29,746 modules.py:1054 INFO Checking whether RCall/0.13.17-foss-2022a-R-4.2.1-Julia-1.9.2 exists... | |
| == 2026-04-30 22:38:29,746 modules.py:1075 INFO Module RCall/0.13.17-foss-2022a-R-4.2.1-Julia-1.9.2 not found via module avail/show, checking whether it is a wrapper | |
| == 2026-04-30 22:38:29,747 modules.py:1082 INFO Result for existence check of RCall/0.13.17-foss-2022a-R-4.2.1-Julia-1.9.2 module: False | |
| == 2026-04-30 22:38:29,747 modules.py:1054 INFO Checking whether RCall/0.13.17-gompi-2022a-R-4.2.1-Julia-1.9.2 exists... | |
| == 2026-04-30 22:38:29,747 modules.py:1075 INFO Module RCall/0.13.17-gompi-2022a-R-4.2.1-Julia-1.9.2 not found via module avail/show, checking whether it is a wrapper | |
| == 2026-04-30 22:38:29,748 modules.py:1082 INFO Result for existence check of RCall/0.13.17-gompi-2022a-R-4.2.1-Julia-1.9.2 module: False | |
| == 2026-04-30 22:38:29,748 modules.py:1054 INFO Checking whether RCall/0.13.17-gfbf-2022a-R-4.2.1-Julia-1.9.2 exists... | |
| == 2026-04-30 22:38:29,748 modules.py:1075 INFO Module RCall/0.13.17-gfbf-2022a-R-4.2.1-Julia-1.9.2 not found via module avail/show, checking whether it is a wrapper | |
| == 2026-04-30 22:38:29,748 modules.py:1082 INFO Result for existence check of RCall/0.13.17-gfbf-2022a-R-4.2.1-Julia-1.9.2 module: False | |
| == 2026-04-30 22:38:29,749 modules.py:1054 INFO Checking whether RCall/0.13.17-GCC-11.3.0-R-4.2.1-Julia-1.9.2 exists... | |
| == 2026-04-30 22:38:29,749 modules.py:1075 INFO Module RCall/0.13.17-GCC-11.3.0-R-4.2.1-Julia-1.9.2 not found via module avail/show, checking whether it is a wrapper | |
| == 2026-04-30 22:38:29,749 modules.py:1082 INFO Result for existence check of RCall/0.13.17-GCC-11.3.0-R-4.2.1-Julia-1.9.2 module: False | |
| == 2026-04-30 22:38:29,749 modules.py:1054 INFO Checking whether RCall/0.13.17-GCCcore-11.3.0-R-4.2.1-Julia-1.9.2 exists... | |
| == 2026-04-30 22:38:29,750 modules.py:1075 INFO Module RCall/0.13.17-GCCcore-11.3.0-R-4.2.1-Julia-1.9.2 not found via module avail/show, checking whether it is a wrapper | |
| == 2026-04-30 22:38:29,750 modules.py:1082 INFO Result for existence check of RCall/0.13.17-GCCcore-11.3.0-R-4.2.1-Julia-1.9.2 module: False | |
| == 2026-04-30 22:38:29,750 easyconfig.py:2587 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'RCall', 'version': '0.13.17', 'versionsuffix': '-R-4.2.1-Julia-1.9.2', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'} | |
| == 2026-04-30 22:38:29,751 easyconfig.py:939 INFO Validating easyconfig | |
| == 2026-04-30 22:38:29,751 easyconfig.py:944 INFO Checking OS dependencies | |
| == 2026-04-30 22:38:29,751 easyconfig.py:1018 INFO OS dependencies ok: [] | |
| == 2026-04-30 22:38:29,751 easyconfig.py:949 INFO Checking skipsteps | |
| == 2026-04-30 22:38:29,752 easyconfig.py:970 INFO Checking build option lists | |
| == 2026-04-30 22:38:29,752 easyconfig.py:973 INFO Checking licenses | |
| == 2026-04-30 22:38:29,753 easyblock.py:5196 INFO Obtained application instance for ResistanceGA (easyblock: Bundle) | |
| == 2026-04-30 22:38:29,753 easyconfig.py:1830 INFO Generating template values... | |
| == 2026-04-30 22:38:29,754 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2026-04-30 22:38:29,754 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2026-04-30 22:38:29,754 easyconfig.py:1849 INFO Template values: arch='x86_64', bitbucket_account='resistancega', github_account='resistancega', module_name='ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', mpi_cmd_prefix='mpirun -n 1', name='ResistanceGA', nameletter='R', nameletterlower='r', namelower='resistancega', rmajver='4', rminver='2', rpath_enabled='false', rshortver='4.2', rver='4.2.1', software_commit='', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='4.2-5', version_major='4', version_major_minor='4.2-5', version_minor='2-5', versionprefix='', versionsuffix='-R-4.2.1-Julia-1.9.2' | |
| == 2026-04-30 22:38:29,755 one.py:179 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2026-04-30 22:38:29,756 filetools.py:2079 INFO Creating directory /tmp/easybuild-tmplog/reprod_20260430223829_15326 (parents: True, set_gid: False, sticky: False) | |
| == 2026-04-30 22:38:29,756 easyblock.py:5477 INFO Dumped easyconfig instance to /tmp/easybuild-tmplog/reprod_20260430223829_15326/ResistanceGA-4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2.eb | |
| == 2026-04-30 22:38:29,756 filetools.py:2079 INFO Creating directory /tmp/easybuild-tmplog/reprod_20260430223829_15326/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2026-04-30 22:38:29,762 filetools.py:2563 INFO /home/s3248973/.local/EasyBuildDev/easybuild-easyblocks/easybuild/easyblocks/generic/bundle.py copied to /tmp/easybuild-tmplog/reprod_20260430223829_15326/easyblocks/bundle.py | |
| == 2026-04-30 22:38:29,762 easyblock.py:5457 INFO Dumped easyblock bundle.py required for reproduction to /tmp/easybuild-tmplog/reprod_20260430223829_15326/easyblocks | |
| == 2026-04-30 22:38:29,763 filetools.py:2079 INFO Creating directory /tmp/easybuild-tmplog/reprod_20260430223829_15326/hooks (parents: True, set_gid: False, sticky: False) | |
| == 2026-04-30 22:38:29,764 filetools.py:2563 INFO /home/s3248973/.local/EasyBuildDev/hooks.py copied to /tmp/easybuild-tmplog/reprod_20260430223829_15326/hooks/hooks.py | |
| == 2026-04-30 22:38:29,765 easyblock.py:5489 INFO Dumped hooks file /home/s3248973/.local/EasyBuildDev/hooks.py which is (potentially) required for reproduction to /tmp/easybuild-tmplog/reprod_20260430223829_15326/hooks/hooks.py | |
| == 2026-04-30 22:38:29,767 filetools.py:1931 INFO Adjusting permissions recursively for /data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2 | |
| == 2026-04-30 22:38:29,768 easyblock.py:2593 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2026-04-30 22:38:29,768 build_log.py:330 INFO building and installing ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2... | |
| == 2026-04-30 22:38:29,770 filetools.py:2162 INFO Lock /data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rome_software_ResistanceGA_4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2.lock does not exist | |
| == 2026-04-30 22:38:29,770 filetools.py:2119 INFO Creating lock at /data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rome_software_ResistanceGA_4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2.lock... | |
| == 2026-04-30 22:38:29,770 filetools.py:2079 INFO Creating directory /data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rome_software_ResistanceGA_4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2.lock (parents: True, set_gid: False, sticky: False) | |
| == 2026-04-30 22:38:29,773 filetools.py:2128 INFO Lock created: /data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rome_software_ResistanceGA_4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2.lock | |
| == 2026-04-30 22:38:29,773 systemtools.py:1432 INFO Limiting parallelism from 256 to 42 | |
| == 2026-04-30 22:38:29,773 easyblock.py:2629 INFO Setting parallelism: 42 | |
| == 2026-04-30 22:38:29,774 build_log.py:330 INFO fetching files and verifying checksums... | |
| == 2026-04-30 22:38:29,774 easyblock.py:4866 INFO Starting fetch step | |
| == 2026-04-30 22:38:29,775 easyconfig.py:1830 INFO Generating template values... | |
| == 2026-04-30 22:38:29,775 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2026-04-30 22:38:29,775 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2026-04-30 22:38:29,775 easyconfig.py:1849 INFO Template values: arch='x86_64', bitbucket_account='resistancega', builddir='/dev/shm/s3248973-EasyBuild/ResistanceGA/4.2-5/foss-2022a-R-4.2.1-Julia-1.9.2', github_account='resistancega', installdir='/data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', module_name='ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', mpi_cmd_prefix='mpirun -n 1', name='ResistanceGA', nameletter='R', nameletterlower='r', namelower='resistancega', parallel='42', rmajver='4', rminver='2', rpath_enabled='false', rshortver='4.2', rver='4.2.1', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='4.2-5', version_major='4', version_major_minor='4.2-5', version_minor='2-5', versionprefix='', versionsuffix='-R-4.2.1-Julia-1.9.2' | |
| == 2026-04-30 22:38:29,776 easyblock.py:4877 INFO Running method fetch_step part of step fetch | |
| == 2026-04-30 22:38:29,776 easyblock.py:2730 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2026-04-30 22:38:29,776 easyblock.py:2760 INFO no sources or data_sources provided | |
| == 2026-04-30 22:38:29,776 easyblock.py:2775 INFO no patches provided | |
| == 2026-04-30 22:38:29,777 easyblock.py:945 INFO Considering directory in which easyconfig file is located when searching for GA_3.2.2.tar.gz: /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA | |
| == 2026-04-30 22:38:29,777 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/s3248973/.local/EasyBuildDev/easybuild-framework/eb | |
| == 2026-04-30 22:38:29,777 tools.py:254 INFO Not considering /home/s3248973/.local/EasyBuildDev (no easybuild/easyconfigs subdir found) | |
| == 2026-04-30 22:38:29,778 tools.py:262 INFO Also considering installation prefix /home/h3/s3248973/.local/EasyBuildDev (via resolved path to 'eb')... | |
| == 2026-04-30 22:38:29,783 easyblock.py:987 INFO Found file GA_3.2.2.tar.gz at /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/GA_3.2.2.tar.gz | |
| == 2026-04-30 22:38:29,796 easyblock.py:781 INFO sha256 checksum for /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/GA_3.2.2.tar.gz: 6245c634a11b8414bde7ed326b8c615512645489b19969619484c865e900bf8c | |
| == 2026-04-30 22:38:29,796 easyblock.py:787 INFO Checksum for extension source GA_3.2.2.tar.gz verified | |
| == 2026-04-30 22:38:29,797 easyblock.py:635 INFO Fetched extension patches: [] | |
| == 2026-04-30 22:38:29,797 easyblock.py:945 INFO Considering directory in which easyconfig file is located when searching for MuMIn_1.47.1.tar.gz: /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA | |
| == 2026-04-30 22:38:29,797 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/s3248973/.local/EasyBuildDev/easybuild-framework/eb | |
| == 2026-04-30 22:38:29,798 tools.py:254 INFO Not considering /home/s3248973/.local/EasyBuildDev (no easybuild/easyconfigs subdir found) | |
| == 2026-04-30 22:38:29,798 tools.py:262 INFO Also considering installation prefix /home/h3/s3248973/.local/EasyBuildDev (via resolved path to 'eb')... | |
| == 2026-04-30 22:38:29,800 easyblock.py:987 INFO Found file MuMIn_1.47.1.tar.gz at /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/MuMIn_1.47.1.tar.gz | |
| == 2026-04-30 22:38:29,803 easyblock.py:781 INFO sha256 checksum for /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/MuMIn_1.47.1.tar.gz: 1223b5ada6f7d58220ac0267fa3473993190742646cbbb3dfe63895e61621af6 | |
| == 2026-04-30 22:38:29,803 easyblock.py:787 INFO Checksum for extension source MuMIn_1.47.1.tar.gz verified | |
| == 2026-04-30 22:38:29,803 easyblock.py:635 INFO Fetched extension patches: [] | |
| == 2026-04-30 22:38:29,804 easyblock.py:945 INFO Considering directory in which easyconfig file is located when searching for spdep_1.2-7.tar.gz: /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA | |
| == 2026-04-30 22:38:29,804 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/s3248973/.local/EasyBuildDev/easybuild-framework/eb | |
| == 2026-04-30 22:38:29,804 tools.py:254 INFO Not considering /home/s3248973/.local/EasyBuildDev (no easybuild/easyconfigs subdir found) | |
| == 2026-04-30 22:38:29,804 tools.py:262 INFO Also considering installation prefix /home/h3/s3248973/.local/EasyBuildDev (via resolved path to 'eb')... | |
| == 2026-04-30 22:38:29,806 easyblock.py:987 INFO Found file spdep_1.2-7.tar.gz at /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/spdep_1.2-7.tar.gz | |
| == 2026-04-30 22:38:29,816 easyblock.py:781 INFO sha256 checksum for /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/spdep_1.2-7.tar.gz: 9dac594825bf2d0aa31e845bfec05d8ce206327840fe455391741dbbdf9c9eea | |
| == 2026-04-30 22:38:29,816 easyblock.py:787 INFO Checksum for extension source spdep_1.2-7.tar.gz verified | |
| == 2026-04-30 22:38:29,817 easyblock.py:635 INFO Fetched extension patches: [] | |
| == 2026-04-30 22:38:29,817 easyblock.py:945 INFO Considering directory in which easyconfig file is located when searching for JuliaCall_0.17.5.tar.gz: /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA | |
| == 2026-04-30 22:38:29,817 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/s3248973/.local/EasyBuildDev/easybuild-framework/eb | |
| == 2026-04-30 22:38:29,817 tools.py:254 INFO Not considering /home/s3248973/.local/EasyBuildDev (no easybuild/easyconfigs subdir found) | |
| == 2026-04-30 22:38:29,818 tools.py:262 INFO Also considering installation prefix /home/h3/s3248973/.local/EasyBuildDev (via resolved path to 'eb')... | |
| == 2026-04-30 22:38:29,820 easyblock.py:987 INFO Found file JuliaCall_0.17.5.tar.gz at /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/JuliaCall_0.17.5.tar.gz | |
| == 2026-04-30 22:38:29,825 easyblock.py:781 INFO sha256 checksum for /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/JuliaCall_0.17.5.tar.gz: 92542f9f02fe43702c18cf6c5a52fcbfc5ef3da6a2f73bfded773f4fc5edd90c | |
| == 2026-04-30 22:38:29,825 easyblock.py:787 INFO Checksum for extension source JuliaCall_0.17.5.tar.gz verified | |
| == 2026-04-30 22:38:29,826 easyblock.py:945 INFO Considering directory in which easyconfig file is located when searching for JuliaCall-0.17.5-top_level_macro.patch: /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA | |
| == 2026-04-30 22:38:29,826 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/s3248973/.local/EasyBuildDev/easybuild-framework/eb | |
| == 2026-04-30 22:38:29,826 tools.py:254 INFO Not considering /home/s3248973/.local/EasyBuildDev (no easybuild/easyconfigs subdir found) | |
| == 2026-04-30 22:38:29,826 tools.py:262 INFO Also considering installation prefix /home/h3/s3248973/.local/EasyBuildDev (via resolved path to 'eb')... | |
| == 2026-04-30 22:38:29,840 easyblock.py:987 INFO Found file JuliaCall-0.17.5-top_level_macro.patch at /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA/JuliaCall-0.17.5-top_level_macro.patch | |
| == 2026-04-30 22:38:29,840 easyblock.py:945 INFO Considering directory in which easyconfig file is located when searching for checksums.json: /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA | |
| == 2026-04-30 22:38:29,840 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/s3248973/.local/EasyBuildDev/easybuild-framework/eb | |
| == 2026-04-30 22:38:29,841 tools.py:254 INFO Not considering /home/s3248973/.local/EasyBuildDev (no easybuild/easyconfigs subdir found) | |
| == 2026-04-30 22:38:29,841 tools.py:262 INFO Also considering installation prefix /home/h3/s3248973/.local/EasyBuildDev (via resolved path to 'eb')... | |
| == 2026-04-30 22:38:29,843 easyblock.py:1020 WARNING Couldn't find file 'checksums.json' anywhere, and downloading it is disabled... Paths attempted (in order): | |
| * /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA/r/ResistanceGA/checksums.json | |
| * /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA/ResistanceGA/checksums.json | |
| * /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA/checksums.json | |
| * /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA/checksums.json | |
| * /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/ResistanceGA/checksums.json | |
| * /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json | |
| * /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA/checksums.json | |
| * /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/ResistanceGA/checksums.json | |
| * /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/checksums.json | |
| * /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/checksums.json | |
| * /data/horse/ws/s3248973-EasyBuild/sources/ResistanceGA/checksums.json | |
| * /data/horse/ws/s3248973-EasyBuild/sources/checksums.json | |
| * /software/util/sources/r/ResistanceGA/checksums.json | |
| * /software/util/sources/ResistanceGA/checksums.json | |
| * /software/util/sources/checksums.json | |
| == 2026-04-30 22:38:29,843 easyblock.py:635 INFO Fetched extension patches: [{'name': 'JuliaCall-0.17.5-top_level_macro.patch', 'postinstall': False, 'path': '/home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA/JuliaCall-0.17.5-top_level_macro.patch', 'checksum': None}] | |
| == 2026-04-30 22:38:29,845 easyblock.py:819 INFO sha256 checksum for /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA/JuliaCall-0.17.5-top_level_macro.patch: 68508176c44fab479bce2a1a4e0302f835bd0d6a980abf860d713bb71f12145a | |
| == 2026-04-30 22:38:29,846 easyblock.py:829 INFO Checksum for extension patch JuliaCall-0.17.5-top_level_macro.patch verified | |
| == 2026-04-30 22:38:29,846 easyblock.py:945 INFO Considering directory in which easyconfig file is located when searching for XR_0.7.2.tar.gz: /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA | |
| == 2026-04-30 22:38:29,846 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/s3248973/.local/EasyBuildDev/easybuild-framework/eb | |
| == 2026-04-30 22:38:29,846 tools.py:254 INFO Not considering /home/s3248973/.local/EasyBuildDev (no easybuild/easyconfigs subdir found) | |
| == 2026-04-30 22:38:29,847 tools.py:262 INFO Also considering installation prefix /home/h3/s3248973/.local/EasyBuildDev (via resolved path to 'eb')... | |
| == 2026-04-30 22:38:29,849 easyblock.py:987 INFO Found file XR_0.7.2.tar.gz at /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/XR_0.7.2.tar.gz | |
| == 2026-04-30 22:38:29,852 easyblock.py:781 INFO sha256 checksum for /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/XR_0.7.2.tar.gz: 7fc35f607d68095f861711fda9acbd8804829ad3915a22a407ab1e9fb89c1949 | |
| == 2026-04-30 22:38:29,853 easyblock.py:787 INFO Checksum for extension source XR_0.7.2.tar.gz verified | |
| == 2026-04-30 22:38:29,853 easyblock.py:635 INFO Fetched extension patches: [] | |
| == 2026-04-30 22:38:29,853 easyblock.py:945 INFO Considering directory in which easyconfig file is located when searching for XRJulia_0.9.0.tar.gz: /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA | |
| == 2026-04-30 22:38:29,853 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/s3248973/.local/EasyBuildDev/easybuild-framework/eb | |
| == 2026-04-30 22:38:29,854 tools.py:254 INFO Not considering /home/s3248973/.local/EasyBuildDev (no easybuild/easyconfigs subdir found) | |
| == 2026-04-30 22:38:29,854 tools.py:262 INFO Also considering installation prefix /home/h3/s3248973/.local/EasyBuildDev (via resolved path to 'eb')... | |
| == 2026-04-30 22:38:29,856 easyblock.py:987 INFO Found file XRJulia_0.9.0.tar.gz at /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/XRJulia_0.9.0.tar.gz | |
| == 2026-04-30 22:38:29,859 easyblock.py:781 INFO sha256 checksum for /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/XRJulia_0.9.0.tar.gz: f59fddbe7ab65562f6e019ca7016417fff81f5b7e5f0ddeb00129aaaa6336f68 | |
| == 2026-04-30 22:38:29,859 easyblock.py:787 INFO Checksum for extension source XRJulia_0.9.0.tar.gz verified | |
| == 2026-04-30 22:38:29,859 easyblock.py:635 INFO Fetched extension patches: [] | |
| == 2026-04-30 22:38:29,860 easyblock.py:945 INFO Considering directory in which easyconfig file is located when searching for ResistanceGA-4.2-5.tar.gz: /home/s3248973/.local/EasyBuildDev/easybuild-easyconfigs/easybuild/easyconfigs/r/ResistanceGA | |
| == 2026-04-30 22:38:29,860 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/s3248973/.local/EasyBuildDev/easybuild-framework/eb | |
| == 2026-04-30 22:38:29,860 tools.py:254 INFO Not considering /home/s3248973/.local/EasyBuildDev (no easybuild/easyconfigs subdir found) | |
| == 2026-04-30 22:38:29,860 tools.py:262 INFO Also considering installation prefix /home/h3/s3248973/.local/EasyBuildDev (via resolved path to 'eb')... | |
| == 2026-04-30 22:38:29,862 easyblock.py:987 INFO Found file ResistanceGA-4.2-5.tar.gz at /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/ResistanceGA-4.2-5.tar.gz | |
| == 2026-04-30 22:38:29,872 easyblock.py:781 INFO sha256 checksum for /data/horse/ws/s3248973-EasyBuild/sources/r/ResistanceGA/extensions/ResistanceGA-4.2-5.tar.gz: 6791c8b42559c0abe94b7a326961f45af2939905021cb9da7220383bf2ea3d75 | |
| == 2026-04-30 22:38:29,872 easyblock.py:787 INFO Checksum for extension source ResistanceGA-4.2-5.tar.gz verified | |
| == 2026-04-30 22:38:29,872 easyblock.py:635 INFO Fetched extension patches: [] | |
| == 2026-04-30 22:38:29,872 easyblock.py:2819 INFO Checking dirs that need to be created: ['/data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', '/data/horse/ws/s3248973-EasyBuild/easybuild-rome/modules/all/ResistanceGA', '/data/horse/ws/s3248973-EasyBuild/easybuild-rome/modules/bio/ResistanceGA'] | |
| == 2026-04-30 22:38:29,875 easyblock.py:4877 INFO Running method checksum_step part of step fetch | |
| == 2026-04-30 22:38:29,875 build_log.py:330 INFO creating build dir, resetting environment... | |
| == 2026-04-30 22:38:29,876 easyblock.py:4866 INFO Starting ready step | |
| == 2026-04-30 22:38:29,876 easyconfig.py:1830 INFO Generating template values... | |
| == 2026-04-30 22:38:29,877 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2026-04-30 22:38:29,877 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2026-04-30 22:38:29,877 easyconfig.py:1849 INFO Template values: arch='x86_64', bitbucket_account='resistancega', builddir='/dev/shm/s3248973-EasyBuild/ResistanceGA/4.2-5/foss-2022a-R-4.2.1-Julia-1.9.2', github_account='resistancega', installdir='/data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', module_name='ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', mpi_cmd_prefix='mpirun -n 1', name='ResistanceGA', nameletter='R', nameletterlower='r', namelower='resistancega', parallel='42', rmajver='4', rminver='2', rpath_enabled='false', rshortver='4.2', rver='4.2.1', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='4.2-5', version_major='4', version_major_minor='4.2-5', version_minor='2-5', versionprefix='', versionsuffix='-R-4.2.1-Julia-1.9.2' | |
| == 2026-04-30 22:38:29,877 easyblock.py:4877 INFO Running method check_readiness_step part of step ready | |
| == 2026-04-30 22:38:29,878 run.py:528 INFO Running '/usr/share/lmod/lmod/libexec/lmod ...' command in /data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/RCall/0.13.17-foss-2022a-R-4.2.1-Julia-1.9.2: | |
| /usr/share/lmod/lmod/libexec/lmod python --terse list | |
| == 2026-04-30 22:38:29,939 run.py:644 INFO '/usr/share/lmod/lmod/libexec/lmod ...' command completed successfully | |
| == 2026-04-30 22:38:29,940 easyblock.py:2679 WARNING Loaded modules detected: ['release/23.10', 'EasyBuild-develop'] | |
| == 2026-04-30 22:38:29,941 easyblock.py:4877 INFO Running method make_builddir part of step ready | |
| == 2026-04-30 22:38:29,941 filetools.py:2079 INFO Creating directory /dev/shm/s3248973-EasyBuild/ResistanceGA/4.2-5/foss-2022a-R-4.2.1-Julia-1.9.2 (parents: True, set_gid: False, sticky: False) | |
| == 2026-04-30 22:38:29,942 easyblock.py:4877 INFO Running method reset_env part of step ready | |
| == 2026-04-30 22:38:29,943 easyblock.py:4877 INFO Running method handle_iterate_opts part of step ready | |
| == 2026-04-30 22:38:29,943 easyconfig.py:1830 INFO Generating template values... | |
| == 2026-04-30 22:38:29,943 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2026-04-30 22:38:29,943 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2026-04-30 22:38:29,944 easyconfig.py:1849 INFO Template values: arch='x86_64', bitbucket_account='resistancega', builddir='/dev/shm/s3248973-EasyBuild/ResistanceGA/4.2-5/foss-2022a-R-4.2.1-Julia-1.9.2', github_account='resistancega', installdir='/data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', module_name='ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', mpi_cmd_prefix='mpirun -n 1', name='ResistanceGA', nameletter='R', nameletterlower='r', namelower='resistancega', parallel='42', rmajver='4', rminver='2', rpath_enabled='false', rshortver='4.2', rver='4.2.1', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='4.2-5', version_major='4', version_major_minor='4.2-5', version_minor='2-5', versionprefix='', versionsuffix='-R-4.2.1-Julia-1.9.2' | |
| == 2026-04-30 22:38:29,944 build_log.py:330 INFO unpacking... | |
| == 2026-04-30 22:38:29,945 easyblock.py:4866 INFO Starting extract step | |
| == 2026-04-30 22:38:29,945 easyconfig.py:1830 INFO Generating template values... | |
| == 2026-04-30 22:38:29,945 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2026-04-30 22:38:29,945 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2026-04-30 22:38:29,946 easyconfig.py:1849 INFO Template values: arch='x86_64', bitbucket_account='resistancega', builddir='/dev/shm/s3248973-EasyBuild/ResistanceGA/4.2-5/foss-2022a-R-4.2.1-Julia-1.9.2', github_account='resistancega', installdir='/data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', module_name='ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', mpi_cmd_prefix='mpirun -n 1', name='ResistanceGA', nameletter='R', nameletterlower='r', namelower='resistancega', parallel='42', rmajver='4', rminver='2', rpath_enabled='false', rshortver='4.2', rver='4.2.1', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='4.2-5', version_major='4', version_major_minor='4.2-5', version_minor='2-5', versionprefix='', versionsuffix='-R-4.2.1-Julia-1.9.2' | |
| == 2026-04-30 22:38:29,946 easyblock.py:4877 INFO Running method extract_step part of step extract | |
| == 2026-04-30 22:38:29,946 build_log.py:330 INFO patching... | |
| == 2026-04-30 22:38:29,947 easyblock.py:4866 INFO Starting patch step | |
| == 2026-04-30 22:38:29,947 easyconfig.py:1830 INFO Generating template values... | |
| == 2026-04-30 22:38:29,947 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2026-04-30 22:38:29,947 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2026-04-30 22:38:29,948 easyconfig.py:1849 INFO Template values: arch='x86_64', bitbucket_account='resistancega', builddir='/dev/shm/s3248973-EasyBuild/ResistanceGA/4.2-5/foss-2022a-R-4.2.1-Julia-1.9.2', github_account='resistancega', installdir='/data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', module_name='ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', mpi_cmd_prefix='mpirun -n 1', name='ResistanceGA', nameletter='R', nameletterlower='r', namelower='resistancega', parallel='42', rmajver='4', rminver='2', rpath_enabled='false', rshortver='4.2', rver='4.2.1', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='4.2-5', version_major='4', version_major_minor='4.2-5', version_minor='2-5', versionprefix='', versionsuffix='-R-4.2.1-Julia-1.9.2' | |
| == 2026-04-30 22:38:29,948 easyblock.py:4877 INFO Running method patch_step part of step patch | |
| == 2026-04-30 22:38:29,948 build_log.py:330 INFO preparing... | |
| == 2026-04-30 22:38:29,949 easyblock.py:4866 INFO Starting prepare step | |
| == 2026-04-30 22:38:29,949 easyconfig.py:1830 INFO Generating template values... | |
| == 2026-04-30 22:38:29,949 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2026-04-30 22:38:29,949 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2026-04-30 22:38:29,950 easyconfig.py:1849 INFO Template values: arch='x86_64', bitbucket_account='resistancega', builddir='/dev/shm/s3248973-EasyBuild/ResistanceGA/4.2-5/foss-2022a-R-4.2.1-Julia-1.9.2', github_account='resistancega', installdir='/data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', module_name='ResistanceGA/4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2', mpi_cmd_prefix='mpirun -n 1', name='ResistanceGA', nameletter='R', nameletterlower='r', namelower='resistancega', parallel='42', rmajver='4', rminver='2', rpath_enabled='false', rshortver='4.2', rver='4.2.1', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='4.2-5', version_major='4', version_major_minor='4.2-5', version_minor='2-5', versionprefix='', versionsuffix='-R-4.2.1-Julia-1.9.2' | |
| == 2026-04-30 22:38:29,950 easyblock.py:4877 INFO Running method prepare_step part of step prepare | |
| == 2026-04-30 22:38:29,951 modules.py:1054 INFO Checking whether R/4.2.1-foss-2022a exists... | |
| == 2026-04-30 22:38:29,951 modules.py:1059 INFO Module R/4.2.1-foss-2022a exists (found in list of available modules) | |
| == 2026-04-30 22:38:29,951 modules.py:1082 INFO Result for existence check of R/4.2.1-foss-2022a module: True | |
| == 2026-04-30 22:38:29,951 modules.py:1054 INFO Checking whether Julia/1.9.2-linux-x86_64 exists... | |
| == 2026-04-30 22:38:29,952 modules.py:1059 INFO Module Julia/1.9.2-linux-x86_64 exists (found in list of available modules) | |
| == 2026-04-30 22:38:29,952 modules.py:1082 INFO Result for existence check of Julia/1.9.2-linux-x86_64 module: True | |
| == 2026-04-30 22:38:29,952 modules.py:1054 INFO Checking whether RCall/0.13.17-foss-2022a-R-4.2.1-Julia-1.9.2 exists... | |
| == 2026-04-30 22:38:29,952 modules.py:1061 INFO Module RCall/0.13.17-foss-2022a-R-4.2.1-Julia-1.9.2 not found in list of available modules, checking via 'module show'... | |
| == 2026-04-30 22:38:29,953 run.py:528 INFO Running '/usr/share/lmod/lmod/libexec/lmod ...' command in /data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/RCall/0.13.17-foss-2022a-R-4.2.1-Julia-1.9.2: | |
| /usr/share/lmod/lmod/libexec/lmod python show RCall/0.13.17-foss-2022a-R-4.2.1-Julia-1.9.2 | |
| == 2026-04-30 22:38:31,570 run.py:644 INFO '/usr/share/lmod/lmod/libexec/lmod ...' command completed successfully | |
| == 2026-04-30 22:38:31,570 modules.py:1075 INFO Module RCall/0.13.17-foss-2022a-R-4.2.1-Julia-1.9.2 not found via module avail/show, checking whether it is a wrapper | |
| == 2026-04-30 22:38:31,571 modules.py:1082 INFO Result for existence check of RCall/0.13.17-foss-2022a-R-4.2.1-Julia-1.9.2 module: False | |
| == 2026-04-30 22:38:31,571 modules.py:1054 INFO Checking whether Circuitscape/5.12.3-Julia-1.9.2 exists... | |
| == 2026-04-30 22:38:31,572 modules.py:1061 INFO Module Circuitscape/5.12.3-Julia-1.9.2 not found in list of available modules, checking via 'module show'... | |
| == 2026-04-30 22:38:31,572 run.py:528 INFO Running '/usr/share/lmod/lmod/libexec/lmod ...' command in /data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/RCall/0.13.17-foss-2022a-R-4.2.1-Julia-1.9.2: | |
| /usr/share/lmod/lmod/libexec/lmod python show Circuitscape/5.12.3-Julia-1.9.2 | |
| == 2026-04-30 22:38:33,146 run.py:644 INFO '/usr/share/lmod/lmod/libexec/lmod ...' command completed successfully | |
| == 2026-04-30 22:38:33,146 modules.py:1075 INFO Module Circuitscape/5.12.3-Julia-1.9.2 not found via module avail/show, checking whether it is a wrapper | |
| == 2026-04-30 22:38:33,149 modules.py:1082 INFO Result for existence check of Circuitscape/5.12.3-Julia-1.9.2 module: False | |
| == 2026-04-30 22:38:33,149 modules.py:1054 INFO Checking whether Suppressor/0.2.4-Julia-1.9.2 exists... | |
| == 2026-04-30 22:38:33,150 modules.py:1059 INFO Module Suppressor/0.2.4-Julia-1.9.2 exists (found in list of available modules) | |
| == 2026-04-30 22:38:33,150 modules.py:1082 INFO Result for existence check of Suppressor/0.2.4-Julia-1.9.2 module: True | |
| == 2026-04-30 22:38:33,170 build_log.py:233 ERROR EasyBuild encountered an error: Missing modules for dependencies (use --robot?): RCall/0.13.17-foss-2022a-R-4.2.1-Julia-1.9.2, Circuitscape/5.12.3-Julia-1.9.2 (at easybuild/tools/toolchain/toolchain.py:603 in _check_dependencies) | |
| Callstack: | |
| easybuild/tools/toolchain/toolchain.py:603 in _check_dependencies | |
| easybuild/tools/toolchain/toolchain.py:903 in prepare | |
| easybuild/toolchains/mpi/openmpi.py:78 in prepare | |
| easybuild/framework/easyblock.py:3095 in prepare_step | |
| easybuild/easyblocks/generic/bundle.py:285 in prepare_step | |
| easybuild/framework/easyblock.py:4893 in run_step | |
| easybuild/framework/easyblock.py:5052 in run_all_steps | |
| easybuild/framework/easyblock.py:5240 in build_and_install_one | |
| easybuild/main.py:184 in build_and_install_software | |
| easybuild/main.py:630 in process_eb_args | |
| easybuild/main.py:814 in main | |
| easybuild/main.py:872 in main_with_hooks | |
| easybuild/main.py:891 in <module> | |
| == 2026-04-30 22:38:33,170 build_log.py:330 INFO ... (took 3 secs) | |
| == 2026-04-30 22:38:33,171 filetools.py:2170 INFO Removing lock /data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rome_software_ResistanceGA_4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2.lock... | |
| == 2026-04-30 22:38:33,175 filetools.py:421 INFO Path /data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rome_software_ResistanceGA_4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2.lock successfully removed. | |
| == 2026-04-30 22:38:33,175 filetools.py:2174 INFO Lock removed: /data/horse/ws/s3248973-EasyBuild/easybuild-rome/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rome_software_ResistanceGA_4.2-5-foss-2022a-R-4.2.1-Julia-1.9.2.lock | |
| == 2026-04-30 22:38:33,175 easyblock.py:400 INFO Closing log for application name ResistanceGA version 4.2-5 |
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