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E-ER / conf_gen.py
Created March 22, 2020 19:33 — forked from tdudgeon/conf_gen.py
Conformer generation using RDKit
import sys
from rdkit import Chem
from rdkit.Chem import AllChem, TorsionFingerprints
from rdkit.ML.Cluster import Butina
def gen_conformers(mol, numConfs=100, maxAttempts=1000, pruneRmsThresh=0.1, useExpTorsionAnglePrefs=True, useBasicKnowledge=True, enforceChirality=True):
ids = AllChem.EmbedMultipleConfs(mol, numConfs=numConfs, maxAttempts=maxAttempts, pruneRmsThresh=pruneRmsThresh, useExpTorsionAnglePrefs=useExpTorsionAnglePrefs, useBasicKnowledge=useBasicKnowledge, enforceChirality=enforceChirality, numThreads=0)
return list(ids)
@E-ER
E-ER / foo_names.md
Created August 11, 2016 11:50 — forked from sunu/foo_names.md
Map slugs to course names

https://archive.org/download/archiveteam_coursera_20160627114043/coursera_20160627114043.megawarc.warc.gz

  • bigdata = Web Intelligence and Big Data
  • clinical skills = Teaching and Assessing Clinical Skills
  • comp finance = Introduction to Computational Finance and Financial Econometrics
  • data sci = Introduction to Data Science
  • dmathgen = 离散数学概论 Discrete Mathematics Generality
  • global introuslaw = The Global Student's Introduction to U.S. Law
  • global theatre = Theatre and Globalization
  • global theatre = Theatre and Globalization
  • inforiskman = Information Security and Risk Management in Context