Chi Zhou ChiZhou-SITI

ChiZhou-SITI / min-char-rnn.py

Created December 11, 2017 11:03 — forked from karpathy/min-char-rnn.py

Minimal character-level language model with a Vanilla Recurrent Neural Network, in Python/numpy

	"""
	Minimal character-level Vanilla RNN model. Written by Andrej Karpathy (@karpathy)
	BSD License
	"""
	import numpy as np

	# data I/O
	data = open('input.txt', 'r').read() # should be simple plain text file
	chars = list(set(data))
	data_size, vocab_size = len(data), len(chars)

ChiZhou-SITI / somaticScan.sh

Created March 14, 2017 13:48 — forked from seandavi/somaticScan.sh

Call varScan using named pipes (fifos)

	#!/bin/bash
	#
	# Author: Sean Davis <seandavi@gmail.com>
	#
	# Uses named pipes (FIFO) to reduce storage needs
	# to call varscan somatic
	# Some details may need to be edited to meet particular needs
	# call with the following parameters
	# 1) The FASTA file containing the reference genome
	# 2) The Normal bam file