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Ali AliSaei

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AliSaei / chat-gpt-cliches.md
Created December 4, 2024 00:03 — forked from chrisgherbert/chat-gpt-cliches.md
ChatGPT Overused Words & Phrases

Chat GPT Cliches

Chat GPT has certain words and phrases that it uses way too much. Here's a rolling list of them. You can ask Chat GPT to avoid them by including custom instructions in the "Customize ChatGPT" menu.

  • A testament to
  • Akin
  • Beacon
  • Bolster
  • Bustling
  • Camaraderie
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AliSaei / install-and-start-postgresql-in-conda-locally
Created February 3, 2023 00:33 — forked from gwangjinkim/install-and-start-postgresql-in-conda-locally
How to install and run postgresql in conda
This gist I write, because I couldn't find step by step instructions
how to install and start postgresql locally (using conda within a conda environment - with the result
that you can run it without sudo/admin rights on your machine!)
and not globally in the operating system (which requires sudo/admin rights on that machine).
I hope, this will help especially people new to postgresql (and those who don't have sudo/admin rights on a specific machine but want
to run postgresql there)!
####################################
# create conda environment
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AliSaei / gist:a19e9e38701b7bab04fce3a4454f9998
Created November 11, 2021 22:04 — forked from Rafe/gist:3102414
AWK cheatsheet
HANDY ONE-LINE SCRIPTS FOR AWK 30 April 2008
Compiled by Eric Pement - eric [at] pement.org version 0.27
Latest version of this file (in English) is usually at:
http://www.pement.org/awk/awk1line.txt
This file will also be available in other languages:
Chinese - http://ximix.org/translation/awk1line_zh-CN.txt
USAGE:
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AliSaei / maker_genome_annotation.md
Created October 11, 2021 22:47 — forked from darencard/maker_genome_annotation.md
In-depth description of running MAKER for genome annotation.

Genome Annotation using MAKER

MAKER is a great tool for annotating a reference genome using empirical and ab initio gene predictions. GMOD, the umbrella organization that includes MAKER, has some nice tutorials online for running MAKER. However, these were quite simplified examples and it took a bit of effort to wrap my head completely around everything. Here I will describe a de novo genome annotation for Boa constrictor in detail, so that there is a record and that it is easy to use this as a guide to annotate any genome.

Software & Data

Software prerequisites:

  1. RepeatModeler and RepeatMasker with all dependencies (I used NCBI BLAST) and RepBase (version used was 20150807).
  2. MAKER MPI version 2.31.8 (though any other version 2 releases should be okay).
  3. [Augustus](http://bio
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AliSaei / server.R
Created September 1, 2018 23:48 — forked from withr/server.R
Encrypt password with md5 for Shiny-app.
library(shiny)
library(datasets)
Logged = FALSE;
PASSWORD <- data.frame(Brukernavn = "withr", Passord = "25d55ad283aa400af464c76d713c07ad")
# Define server logic required to summarize and view the selected dataset
shinyServer(function(input, output) {
source("www/Login.R", local = TRUE)
observe({
if (USER$Logged == TRUE) {