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AlexSartori
/ krona-download.sh
Last active
April 7, 2026 10:01
Alternative accession data download script for Krona for when NCBI FTP breaks
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| #!/bin/bash | |
| # Alternative download script for Krona (https://github.com/marbl/Krona) for when (always) NCBI FTP breaks. | |
| # Built for krona 2.8.1 | |
| pushd [...]/opt/krona/taxonomy/accession2taxid | |
| FILES="dead_nucl.accession2taxid dead_prot.accession2taxid dead_wgs.accession2taxid nucl_gb.accession2taxid nucl_wgs.accession2taxid prot.accession2taxid" | |
| for f in $FILES; do |
AlexSartori
/ EnergyPLAN_output_parser.py
Last active
January 3, 2023 15:17
Python script to parse EnergyPLAN's output data and convert it to JSON
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| #!/usr/bin/env python3 | |
| import re, sys, json | |
| def print_err(msg): | |
| print(' \u001b[31m✖\u001b[0m - ' + msg) | |
| def print_wrn(msg): | |
| print(' \u001b[33m!\u001b[0m - ' + msg) |