Nathan Sheffield nsheff

A table of conferences that may be of interest to group members. Please add new conferences in chronological order.

2022

Date	Location	Conference
July 1-14	Madison Wisconsin	ISMB

Date	Location	Conference

(shamelessly stolen from the erlang project)

Good commit messages serve at least three important purposes:

To speed up the reviewing process.
To help us write a good release note.
To help the future maintainers of Erlang/OTP (it could be you!), say five years into the future, to find out why a particular change was made to the code or why a specific feature was added.

	mkdir -p md

	for f in `ls *.note`; do
	TITLE=`xml_grep 'title' "$f" --text_only`
	echo "$f: $TITLE"
	NOTE_CONTENT=`xml_grep 'note-content' "$f" --text_only`
	CREATE_DATE=`xml_grep 'create-date' "$f" --text_only`
	MOD_DATE=`xml_grep 'last-change-date' "$f" --text_only`

	echo "---

	# Handle the pypi README (long description) formatting.
	try:
	import pypandoc
	long_description = pypandoc.convert_file('README.md', 'rst')
	msg = "\033[032mPandoc conversion succeeded.\033[0m"
	except(IOError, ImportError, OSError):
	msg = "\033[0;31mWarning: pandoc conversion failed!\033[0m"
	long_description = open('README.md').read()

	import base64
	import hashlib
	import binascii

	# Refget digests from published refget v1.0 protocol
	# Retrieved July 2019
	# http://samtools.github.io/hts-specs/refget.html

	def trunc512_digest(seq, offset=24):
	digest = hashlib.sha512(seq.encode()).digest()

	Markdown:

	# Code blocks

	```
	This is a fenced code block
	```

	This is an indented code block

	``` {r}
	library("LOLA")
	dbPath = system.file("extdata", "hg19", package="LOLA")
	regionDB = loadRegionDB(dbPath)
	locResults = runLOLA(userSet, userUniverse, regionDB, cores=1)
	locResults[order(support, decreasing=TRUE),]
	writeCombinedEnrichment(locResults, outFolder= "lolaResults");
	```